Protein Info for LU632_RS21455 in Erwinia tracheiphila SCR3

Name: csrD
Annotation: RNase E specificity factor CsrD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 649 transmembrane" amino acids 7 to 33 (27 residues), see Phobius details amino acids 134 to 157 (24 residues), see Phobius details amino acids 288 to 307 (20 residues), see Phobius details PF17157: GAPES4" amino acids 34 to 130 (97 residues), 48.7 bits, see alignment E=1.3e-16 PF00990: GGDEF" amino acids 228 to 383 (156 residues), 80.4 bits, see alignment E=2e-26 PF00563: EAL" amino acids 406 to 633 (228 residues), 131.6 bits, see alignment E=4.7e-42

Best Hits

KEGG orthology group: None (inferred from 72% identity to ebi:EbC_40740)

Predicted SEED Role

"RNase E specificity factor CsrD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (649 amino acids)

>LU632_RS21455 RNase E specificity factor CsrD (Erwinia tracheiphila SCR3)
MRLTTRLSAIITLLSAGAMLLMLVGCIISFFYLSDERAEHRLLTMSQDIDAALVNETPEQ
MLPWLPQVMGPLQIHRILFIENGKKSLELTHHQDAVLEDEPNKYRETNITLENHPAFALR
IIWVDTAKTWLNSFIGASIFTIIIFIVSTLILIMILAHRWLYRQLQGMEHLELRAEKVLK
GQRGTIRQGSVHEWPPKASSAIDLLLSDLHEAAEQRNRVDTLIRAFASKDAKTGLNNRMF
FDNQLSTMLEDTEGTGAHGMVMMIRFADFDTLRDSWGRSLTKEYLFDLVNLLSTFVMRYP
GALLARYFRSDFAVLLPHRSLKDADGIASQLINAVDALPVMRKLDREDMIHIGISGWFSG
QSTQQVMESVEVATRHAALSGGNNWSVGEAPQQDRSRGSVKWRTLLEKTLQRSSARLYQK
PAVTCAGHVDHHEIMPRIFDGENEISSAEYLPFVQQLGLAESYDRQLVANILALLPVYPE
ETLAIPLMVDAIIRRSFQRWLRDMLLQYTKPQRNCILFELAEADVCQHSTRLSTAFRLLK
GFGCRIAISQAGLTVVSTSYIKQFDVELIKLHPGLVRNIEQRTENQLFVQSLLESCKPTA
TRVFAAGVKRDAEWQTLVELGVQGGQGEYFAPPELLTSDVKKFSQRYRV