Protein Info for LU632_RS20840 in Erwinia tracheiphila SCR3

Annotation: DUF445 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 41 to 66 (26 residues), see Phobius details amino acids 120 to 136 (17 residues), see Phobius details amino acids 401 to 419 (19 residues), see Phobius details PF04286: DUF445" amino acids 49 to 421 (373 residues), 354.3 bits, see alignment E=7.2e-110

Best Hits

Swiss-Prot: 58% identical to YJIN_ECOLI: Uncharacterized protein YjiN (yjiN) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 76% identity to ebi:EbC_39630)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (429 amino acids)

>LU632_RS20840 DUF445 family protein (Erwinia tracheiphila SCR3)
MHKEFELARSKRLPLILLCGAALVFVITVLFPVWFKPTPWIAMLKAISEAAMVGALADWF
AVSALFRRVPIPLVGRHSAIIPRNRDRIADNLALFVQDKFLNTDALLTLIRRHDPALRVA
SWVSMPANAAIFSGYLLKMFRGFLDLTDDRRIQAFMRQAIHKAIDKIDLSHSTAVVLESL
TKNNRHQALLDDAISQWLYLVNKPGTHEFIARQVVLWLKREHPVKEKMLPTEWLGEKTAG
LAADAVKSILSDIEQDGTHELRQGFNRAVQRLIVRLRDDPEMRSKAEEIKAWLKQDATLN
TYIGQLWGDLRSWLKQDLDNPESVIQARVSAAGQWLGESLLRDVQLRNSLNQHLEEAAIG
IAPEFSTFLSRHISDTVKSWDERDMSHQVELNIGKDLQRIRINGTLVGGAIGLTLYLLSQ
LPELLAQLR