Protein Info for LU632_RS19055 in Erwinia tracheiphila SCR3

Annotation: ATP-binding cassette domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 PF00005: ABC_tran" amino acids 21 to 169 (149 residues), 108.5 bits, see alignment E=6.6e-35 PF13304: AAA_21" amino acids 138 to 205 (68 residues), 27.6 bits, see alignment E=4.3e-10

Best Hits

KEGG orthology group: K02032, peptide/nickel transport system ATP-binding protein (inferred from 84% identity to ebi:EbC_09290)

Predicted SEED Role

"Putative ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (221 amino acids)

>LU632_RS19055 ATP-binding cassette domain-containing protein (Erwinia tracheiphila SCR3)
MIELQKLSVAHRQGYEQRTVVHDISLDVATGECFGLVGPSGCGKSSLLWVMAGLNLNWQG
SMTLAGHSVAAGRPFTGVLRRSVQMVFQDPYASLHPRHRLRRTLAEPLKLLKVENINERI
DSGFRHAGLDPALADRFPHQLSGGQRQRVAIVRALLLEPKILLLDEPTSALDMSVQAEIL
NLLNWLKQEDNLTMVLVSHDPDVIDHMCDRAVRMESGYIVG