Protein Info for LU632_RS18815 in Erwinia tracheiphila SCR3

Annotation: Mu transposase C-terminal domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 660 PF02316: HTH_Tnp_Mu_1" amino acids 11 to 129 (119 residues), 57.6 bits, see alignment E=3.6e-19 PF09039: HTH_Tnp_Mu_2" amino acids 150 to 256 (107 residues), 134.5 bits, see alignment E=3.2e-43 PF02914: DDE_2" amino acids 259 to 470 (212 residues), 379.2 bits, see alignment E=1.5e-117 PF09299: Mu-transpos_C" amino acids 485 to 553 (69 residues), 46.3 bits, see alignment E=6.9e-16

Best Hits

Swiss-Prot: 53% identical to TNPA_BPMU: DDE-recombinase A (A) from Escherichia phage Mu

KEGG orthology group: None (inferred from 53% identity to ecw:EcE24377A_1049)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (660 amino acids)

>LU632_RS18815 Mu transposase C-terminal domain-containing protein (Erwinia tracheiphila SCR3)
MDRNDWYTAQELAGLPGLPTTERGIRKLASSSSWNGRKRGSSKAIEYPIESFPIEARVAL
LKKAENIKIGEKFYKVKKSSIEFYCRESLWQHWNNASNRQREKARAKCEAVMAVAGLIDS
GIDTLTAFDSVGKALHIAPASVRRWYYLARPFDRTDWLAALVGKHGRNLSTRKKKEAECS
PDAWDFLLADYLRPEQPALRTCYARLKEAATAHGWTIPSLSSLRRKLEREVPTEQMVLLR
EGEHALMQLYPAQERSVLELDAMEWINGDGYQHNVFVRWFNGEVIRPKTWVWQDIRSRKI
LGWRTDVSENSDSIRLALADVVGQYGIPKHITIDNTRAAANKWMTGGVSNRYRFKVKEDD
PKGIIPLLGIKLHWTSVLFGQGHGQAKPVERAFSHGGLCEVVDKHPLLAGAYTGASPMAK
PDNYGERVVEARVFLKALAEGIAFWNRRPGRDTEVCRGILSFDAAFEQSYQESAVRKATA
EQRHLLLLPSEAVTVNSGTFTLKAGGKLQNRENRYYNEQLLGVKPNKIVVRFDPAQLHAS
VLCYTLDGRFICEAACIEKAGFGDTQAAREHHRNRTRFVKRTKEATAAQRRMTALEVAER
MPDTLPPEPPESRVVEICRPAGNTVRREWAEEQPETGYDHAFENAVACLHEQQQKNNLGV