Protein Info for LU632_RS18735 in Erwinia tracheiphila SCR3

Annotation: DUF3486 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 PF11985: Phage_Mu_Gp27" amino acids 13 to 189 (177 residues), 188.8 bits, see alignment E=5.7e-60

Best Hits

Swiss-Prot: 51% identical to VG27_HAEIN: Mu-like prophage FluMu protein gp27 (HI_1499) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 76% identity to xne:XNC1_3376)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>LU632_RS18735 DUF3486 family protein (Erwinia tracheiphila SCR3)
MQDKRTRGRPSKIDLLPSVIRDQLHGLLRDKRHTQEDIRAAVNELIDGHGLGDDMKLSRT
GLNRYASRMEEIGSKIRQSREVAEVWCAKLGDAPTSDVGKLLQEVVRTLAFETGMAMSEN
GEPVEPKAISQLALAIQRVEQAAMTSLKREKEIRAAFAAEAADKAEKIVKQAGLTADAAA
DIRRQILGIV