Protein Info for LU632_RS18645 in Erwinia tracheiphila SCR3

Annotation: phage GP46 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 146 PF07409: GP46" amino acids 28 to 133 (106 residues), 124.7 bits, see alignment E=6.7e-41

Best Hits

Swiss-Prot: 55% identical to BP46_BPMU: Baseplate protein gp46 (Mup46) from Escherichia phage Mu

KEGG orthology group: None (inferred from 70% identity to xne:XNC1_3396)

Predicted SEED Role

"Bacteriophage protein GP46"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (146 amino acids)

>LU632_RS18645 phage GP46 family protein (Erwinia tracheiphila SCR3)
MTDIALIWQTNGADIAVGNADILLDDSLSTAVIISLFTDRRALDSDELPAGPDTDKRGWW
GDAFQSRQMGSRLWLLSREKQMASVLIRARTYACEALAWLVDDGHIRHVDVTASAPRTGF
LLLTVMLTLPDGSTVPLAFNTTLNGI