Protein Info for LU632_RS18230 in Erwinia tracheiphila SCR3

Annotation: metal ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 288 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 56 to 84 (29 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 179 to 210 (32 residues), see Phobius details amino acids 224 to 245 (22 residues), see Phobius details amino acids 253 to 276 (24 residues), see Phobius details PF00950: ABC-3" amino acids 10 to 268 (259 residues), 166.8 bits, see alignment E=3.6e-53

Best Hits

KEGG orthology group: K02075, zinc/manganese transport system permease protein (inferred from 87% identity to ebi:EbC_10310)

Predicted SEED Role

"Zinc ABC transporter, inner membrane permease protein ZnuB" in subsystem Transport of Zinc

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (288 amino acids)

>LU632_RS18230 metal ABC transporter permease (Erwinia tracheiphila SCR3)
MLLTAPFVEFGFMRRALVACVALSLSATPLGVFLLLRRMSLVGDALSHAVLPGAAIGYLI
SGLSLVAMGTGGIIAGLSVALLSGAVSRFTPLREDASFAAFYLGSLALGVTLVSLRGSSI
DLLHVLFGSLLAVDNPSIILVSGVASFTLLALALIYRPLVIDAFDPAFLHAQSRWVPPLV
HSIFLMLVVTNLVAGFQVLGTLMCVGLMMLPAAAARFWSVRLPGMIFTAMLLALIASFTG
LIASWYCSLPAGPAVILNAAILFFISILIGPCGGIFRKRPFSIGKEKA