Protein Info for LU632_RS17620 in Erwinia tracheiphila SCR3

Name: yejM
Annotation: LPS biosynthesis-modulating metalloenzyme YejM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 583 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 52 to 78 (27 residues), see Phobius details amino acids 86 to 108 (23 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 170 to 190 (21 residues), see Phobius details PF11893: DUF3413" amino acids 6 to 250 (245 residues), 353.2 bits, see alignment E=9.9e-110 PF00884: Sulfatase" amino acids 276 to 498 (223 residues), 85.2 bits, see alignment E=7.7e-28

Best Hits

KEGG orthology group: K07014, (no description) (inferred from 80% identity to ebi:EbC_30220)

Predicted SEED Role

"FIG001881: hydrolase of alkaline phosphatase superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (583 amino acids)

>LU632_RS17620 LPS biosynthesis-modulating metalloenzyme YejM (Erwinia tracheiphila SCR3)
MVTSQQRYREKVSQMIGWGHWFALFNILFAFILGSRYLFVSDWPASLVGRIYAFTSWIGH
FSFIVFATYLLIIFPLTFVVMSQRLLRFLSAIVATAGLTLILVDSAVFNRFHLHLNPVVW
ELVINPDQSELTRDWQLMFISVPAIFLVEMLFATWSWQKLRSLNRRNFGKPLAVLFISAF
CSSHIMYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLNAQEYQRRLVEQGAPGA
VSVAYPLNNILFRDGGTHNNLLMITVDGLNAATLQQSLPHLAQFASQNLNFTQHFSSGSA
PDSGLFGLFYGISPSYMDGVLSARMPSALIDALSKQGYQFGLFASDGFASPLYRQALLAD
YSLPPSNIQHDGQTVVQWQTWFEEQNSTNAPWFSYLSFSGRGLADSNQDKFLHHYERNAS
DVDNQIQQVLSVLRTKGVLDNTVVVITAQHGVALDGDISMGNRANLRVPLIVHWPNTPAQ
QINKLTVHADIMTTLMQRLLHVSTAPSDYSQGEDLFAARRRNDWVASNSNHKLVVTTPQI
TLLLDNNGSYTAWDNAGNQLKDHKPQLALLLQVLTEEKRFIAN