Protein Info for LU632_RS15995 in Erwinia tracheiphila SCR3

Annotation: phage tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 623 transmembrane" amino acids 133 to 153 (21 residues), see Phobius details amino acids 532 to 535 (4 residues), see Phobius details amino acids 570 to 585 (16 residues), see Phobius details PF10145: PhageMin_Tail" amino acids 197 to 359 (163 residues), 67.1 bits, see alignment E=9.9e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (623 amino acids)

>LU632_RS15995 phage tail tape measure protein (Erwinia tracheiphila SCR3)
MSRNLSLSLSLTAKDSGSKVLRAAMQEASKQVRQLEKDQQKSGEAGIRASKALTDEYRRS
SEARSVLGIRSERQIQREIQQTTAAYNRLTRTGVMSASEQARAFDSMRQRVTQLRGELTR
TSETMSRMSKARVLGGNIMALGGGIAAAGAVLAQPAREQMTYSQRLAGIANTAYNQLPPE
QRIAAKAQLGDAIKGAVRKGGGTADTAANALGVLMSKGGVDDKTAMSVLGDVMYTSTATN
SNPEEIAQLTVTALNNFKIKKEELPLFFDKLTRSGELGGFELTDMAKELPTIMTNYSKLG
MGGLKDLDLLLGNLQANSATSGNNDTAANNFNNLLLKVTSADTMNSMKNRLFRVDGQKPV
SYADYLVSQRSKGKNTYESFVNAIDATVTSDKGYKKLTSDIEKNKGTKKEGDLRAARDVL
ASSIIASIIPDQQAQLALTTAFLKKDYIKEQVAGTNKANGAVSSSFQVVASESDYKLNQL
ANEKFFADGEVFGGFNKNLGDAASAIAEYAKKYPMLSVAVEGATKGIVAMTAAAYVFAGI
RMFQNGGIAASIPGAAGAAGAGVGGRLAGMLSIATPAIAITAGSVDLSTMRDKLREDFIK
KPMPEKIEAIENGSSGYSFVDIA