Protein Info for LU632_RS15695 in Erwinia tracheiphila SCR3

Annotation: DedA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 41 to 61 (21 residues), see Phobius details amino acids 82 to 104 (23 residues), see Phobius details amino acids 110 to 132 (23 residues), see Phobius details

Best Hits

Swiss-Prot: 55% identical to YQAA_SHIFL: Inner membrane protein YqaA (yqaA) from Shigella flexneri

KEGG orthology group: None (inferred from 75% identity to ebi:EbC_34780)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (136 amino acids)

>LU632_RS15695 DedA family protein (Erwinia tracheiphila SCR3)
MNDWFSRGTMFASSFLSATLLPGSSEVLLVALLIAGNVSVPGIIFCAALANTLGGLTNII
IGRILPQGRWQGTAQAWLSRWGSAVLLMSWLPVIGDVLCVLAGWLRLSWLAMVFFLAAGK
TLRYVVVAFVTLHGME