Protein Info for LU632_RS15675 in Erwinia tracheiphila SCR3

Annotation: inner membrane protein YpjD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF01578: Cytochrom_C_asm
  • amino acids 39 to 260 (222 residues), 138.6 bits, E=1.2e-44

Best Hits

Swiss-Prot: 73% identical to YPJD_ECOLI: Inner membrane protein YpjD (ypjD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 90% identity to ebi:EbC_34740)

Predicted SEED Role

"Glutamate synthase [NADPH] small chain (EC 1.4.1.13)" in subsystem Ammonia assimilation or Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis (EC 1.4.1.13)

MetaCyc Pathways

• L-glutamate and L-glutamine biosynthesis (6/7 steps found)
• ammonia assimilation cycle III (3/3 steps found)
• L-glutamate biosynthesis I (2/2 steps found)
• L-glutamine degradation I (1/1 steps found)
• L-glutamine degradation II (1/1 steps found)
• L-citrulline biosynthesis (6/8 steps found)
• superpathway of L-citrulline metabolism (8/12 steps found)
• L-asparagine biosynthesis III (tRNA-dependent) (1/4 steps found)
• glutaminyl-tRNA^gln biosynthesis via transamidation (1/4 steps found)

KEGG Metabolic Maps

• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Glutamate metabolism
• Nitrogen metabolism

Isozymes

Compare fitness of predicted isozymes for: 1.4.1.13

Use Curated BLAST to search for 1.4.1.13

Protein Sequence (263 amino acids)

>LU632_RS15675 inner membrane protein YpjD (Erwinia tracheiphila SCR3)
MSVFAILALLAYSFCLALIVPGLLRKQSTWRKLAVVSATAALIFHATALYQRIFAMPGGL
NLSLLNIGSLVSLLICAIMTIVASRNRGWMLLPIVYGFALINLAFATFVPNAFITHLETT
PGMMMHIGLALFAYVTLIIAALYALQLAWIDWLLKNKKLTLSNDIPPLMTIERKMFHITQ
VGVVLLTLVLCTGLFYMHNLFSPENVDKAVLSILAWFIYIVLLWGHYHEGWRGRRVAWFN
FGGAFLLTMAYFGSRMLQHFLTS