Protein Info for LU632_RS15550 in Erwinia tracheiphila SCR3

Annotation: head completion/stabilization protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 PF05926: Phage_GPL" amino acids 14 to 150 (137 residues), 133 bits, see alignment E=4e-43

Best Hits

Swiss-Prot: 40% identical to VPL_BPHC1: Probable head completion/stabilization protein from Haemophilus phage HP1 (strain HP1c1)

KEGG orthology group: None (inferred from 79% identity to yen:YE0871)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (150 amino acids)

>LU632_RS15550 head completion/stabilization protein (Erwinia tracheiphila SCR3)
MFRPGDDGFQHAVLTNDGFWPDLALDEFQRQRSIPPTIHQDTVKQALLAAVAEINPTLAA
FVSRQQRKGYGSASDLPGPQMDGDNAVMAQYKKAVYARAKADLLGEFAAVSRREDNTNQD
APQTKASLLAEAALVLRNLKGRGRVGVHLI