Protein Info for LU632_RS15255 in Erwinia tracheiphila SCR3

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 805 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 243 to 264 (22 residues), see Phobius details amino acids 290 to 313 (24 residues), see Phobius details amino acids 336 to 358 (23 residues), see Phobius details amino acids 379 to 398 (20 residues), see Phobius details amino acids 404 to 426 (23 residues), see Phobius details amino acids 447 to 473 (27 residues), see Phobius details amino acids 680 to 700 (21 residues), see Phobius details amino acids 728 to 752 (25 residues), see Phobius details amino acids 767 to 790 (24 residues), see Phobius details PF02687: FtsX" amino acids 247 to 362 (116 residues), 41.8 bits, see alignment E=4.9e-15 amino acids 683 to 794 (112 residues), 53.1 bits, see alignment E=1.6e-18

Best Hits

Swiss-Prot: 70% identical to YBBP_ECOLI: Uncharacterized ABC transporter permease YbbP (ybbP) from Escherichia coli (strain K12)

KEGG orthology group: K02004, (no description) (inferred from 79% identity to eay:EAM_1058)

Predicted SEED Role

"FIG00809136: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (805 amino acids)

>LU632_RS15255 ABC transporter permease (Erwinia tracheiphila SCR3)
MIWRWFWREWKSPSLLIVWLALTLAVACVLALGSLSDRMEKGLTQQSRDFMAGDRTLQSS
REVPQAWLDKAREAGLQVGRQLTFMTMTFSGDVPQLAAVKAVDDLYPMFGKLVTRPPELK
PAEGTVLAAPRLLALLNLKVGDNIDVGDTTLRIVGEVIQEPDSGFNPFQTVPGLLMNLAD
VQKTGAVQPGSRLTWRYKFSGTPVQLAGYDRFIESNIRPDQRWISIDNSDDALGKSVQRA
QQFLLLSSLLTLMLAIAALTVAMSHYCRSRYDLIAVLKTLGANRAALSKLIVGQWLAVLL
LAGVSGSLMGVGFERVLLKMLQPVLPGVLPAASAWPWLWAMGALFIISFMVGVRPYRLLL
ATQPLRVLRRDAVANIWPLKYYLPAMALLVVAMLSLLVGGSKLLWVLVGGIVLLSLLLGG
IGWLGLKMLRRLSIRSLPFRLAAMRLLCQPWTTLSQLAAFSFSFMLLALLLVMRGDLLER
WQQQLPSDSPNYFLLNLTRDQVPQVNSFLQQHHVEPQSFYPVVRARLTEINHQQADPSRD
NALNRELNLTWQDRLPDHNPLTAGNWPPQKGEVSMEVTLAERLGVGPGDTLTFTADTQTF
SAKVTSLRKVDWESLKPNFLFIFPSHVLDDQPQAWLTSFRLEGNSELLAQLNRRFPTLNL
LDIGAILRQIDQVLAQISRAMEIMVVLVTACGGLLLLAQVQVGMRQRRQELVVWRTLGAS
KKLLRATLWYEFALLGLVSGVAAAIGTEVALWGLQRKVFDFPWQPDFLLWITLPLAGAVL
LSLCGGWLGVRLLKGKALFRHYHSD