Protein Info for LU632_RS12245 in Erwinia tracheiphila SCR3

Annotation: IS1-like element transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 91 PF03811: Zn_Tnp_IS1" amino acids 1 to 35 (35 residues), 33.1 bits, see alignment E=9.4e-12 PF12759: HTH_Tnp_IS1" amino acids 43 to 86 (44 residues), 67.3 bits, see alignment E=1.8e-22 PF13384: HTH_23" amino acids 52 to 90 (39 residues), 25.8 bits, see alignment E=1.8e-09 PF13518: HTH_28" amino acids 55 to 89 (35 residues), 25.5 bits, see alignment E=2.8e-09 PF13412: HTH_24" amino acids 67 to 89 (23 residues), 22.4 bits, see alignment E=1.9e-08

Best Hits

Swiss-Prot: 55% identical to INA1_SHIDY: Insertion element iso-IS1d protein InsA (insA) from Shigella dysenteriae

KEGG orthology group: None (inferred from 55% identity to sdy:SDY_2763)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (91 amino acids)

>LU632_RS12245 IS1-like element transposase (Erwinia tracheiphila SCR3)
MAKVDVVCPQCNETHAVRCNGHSASGAQRYICKHCSKTFQLNFSYSGAKPDTHQTIVNMA
MNGYGCRDIARVLGISLNTVLRHVKKFRQSR