Protein Info for LU632_RS12225 in Erwinia tracheiphila SCR3

Annotation: glucose PTS transporter subunit IIA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 515 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 28 to 49 (22 residues), see Phobius details amino acids 57 to 76 (20 residues), see Phobius details amino acids 88 to 110 (23 residues), see Phobius details amino acids 130 to 153 (24 residues), see Phobius details amino acids 164 to 190 (27 residues), see Phobius details amino acids 210 to 230 (21 residues), see Phobius details amino acids 240 to 260 (21 residues), see Phobius details amino acids 268 to 287 (20 residues), see Phobius details amino acids 311 to 334 (24 residues), see Phobius details PF02378: PTS_EIIC" amino acids 3 to 275 (273 residues), 107.4 bits, see alignment E=8e-35 PF00358: PTS_EIIA_1" amino acids 362 to 486 (125 residues), 154.5 bits, see alignment E=1.1e-49 TIGR00830: PTS system, glucose subfamily, IIA component" amino acids 363 to 482 (120 residues), 134.8 bits, see alignment E=7.4e-44

Best Hits

KEGG orthology group: None (inferred from 62% identity to api:100167452)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (515 amino acids)

>LU632_RS12225 glucose PTS transporter subunit IIA (Erwinia tracheiphila SCR3)
MAASGILKGLLAISLAFGLMDEQDGNYKILFVASDALFYFLPIVLGYCAGKKFGGNPFIC
MTIAGALIHPTILAAFRQAQSGDSAMSFLGIPVILINYASSVIPIILASWVSCRTERWLT
PRLPGAVRNFITPLCCLVLVVPLTFLIIGPLAIKFSHLLANGYLWIYALSPLVAGLFLGS
LWQVLVIFGLHWGMVPLMLNNLSIYGQDSMLPLLTAAVLGQTGATLGVLLRTRDSKLKGI
AASAFSACWFGITEPAVYGVNLPKRRPFILGCIGGALGAAIIGYHQARVYSFGLANIFTL
FQTIPDTGIDASVIAVFAGALVALVFAAVSTWLFGLPDEKSVPVAGAESPHPTTPLLKTI
VLNSPMAGKVIPLENVPGQTFASGLLGKGVGIVPASGRVISPVNGKVVSLFHTGHAIGLL
SDDGVEFLIHIGLDTVKLAGKYFIPHVSELQRIRCGDVLVEFDLAAIQQAGYDLTTPIII
SNSDDYLDVIPATEQEIIQENMPLMTVFLQSKTRS