Protein Info for LU632_RS11550 in Erwinia tracheiphila SCR3

Name: pspC
Annotation: envelope stress response membrane protein PspC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 117 transmembrane" amino acids 35 to 61 (27 residues), see Phobius details TIGR02978: phage shock protein C" amino acids 5 to 117 (113 residues), 126 bits, see alignment E=3.7e-41 PF04024: PspC" amino acids 5 to 63 (59 residues), 57.4 bits, see alignment E=5.1e-20

Best Hits

KEGG orthology group: K03973, phage shock protein C (inferred from 74% identity to ebi:EbC_23050)

Predicted SEED Role

"Phage shock protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (117 amino acids)

>LU632_RS11550 envelope stress response membrane protein PspC (Erwinia tracheiphila SCR3)
MKGGKKLYRIPVRGKLKGVCAGIADYLDIPVQLLRVIVVLSMFFGLFMFTLIVYFVLAFV
LDEQPEEVVARHGSEPSVHQRLEQLSRELQSGEHSLRNMERYVTSETFSVRRRFRQL