Protein Info for LU632_RS10265 in Erwinia tracheiphila SCR3

Name: mdoC
Annotation: glucans biosynthesis protein MdoC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 15 to 34 (20 residues), see Phobius details amino acids 54 to 75 (22 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details amino acids 169 to 192 (24 residues), see Phobius details amino acids 209 to 230 (22 residues), see Phobius details amino acids 242 to 260 (19 residues), see Phobius details amino acids 273 to 293 (21 residues), see Phobius details amino acids 305 to 330 (26 residues), see Phobius details amino acids 337 to 357 (21 residues), see Phobius details PF01757: Acyl_transf_3" amino acids 10 to 355 (346 residues), 109.7 bits, see alignment E=7.9e-36

Best Hits

Swiss-Prot: 60% identical to OPGC_SALPC: Glucans biosynthesis protein C (mdoC) from Salmonella paratyphi C (strain RKS4594)

KEGG orthology group: K11941, glucans biosynthesis protein C [EC: 2.1.-.-] (inferred from 79% identity to ebi:EbC_16070)

Predicted SEED Role

"Glucans biosynthesis protein C (EC 2.1.-.-)" (EC 2.1.-.-)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (374 amino acids)

>LU632_RS10265 glucans biosynthesis protein MdoC (Erwinia tracheiphila SCR3)
MTRKTQQREYFFDSIRAYLMLLGVPFHVSLIYSTQSWSVNSPAPSEWLTILNDFIHAFRM
QVFFVISGYFSYMLFQRYSHRHWLKVRLERVGIPMLAAIPLLTLPQFFMIQAWTTKIGDW
HSLSLYDKLNALSWDLISHLWFLLVLMVLTVAGVWIFKWLNNRQSSENYFASPGWIKLSF
AVLVYSVVWGALRRLLVLFTPHLLGNGLFNYGVMQSLFFLPFFVLGAMTWKYPAIKTHFI
KPIPWTFIGSAVAFAAYVANQTWNKDESWLYEIDAVVSMMMGLWMVNVVFSLGHRLLNTH
SPRVTYLVNASLFIYLVHHPLTILYGIFLVPDISNNALGFFAGLLFVFGIAFILYEIHLR
IPLLRFLFSGKPQR