Protein Info for LU632_RS09880 in Erwinia tracheiphila SCR3

Name: mukB
Annotation: chromosome partition protein MukB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1487 PF04310: MukB" amino acids 2 to 227 (226 residues), 392.2 bits, see alignment E=1.5e-121 PF13555: AAA_29" amino acids 8 to 54 (47 residues), 31.5 bits, see alignment (E = 2.3e-11) PF16330: MukB_hinge" amino acids 645 to 810 (166 residues), 242.2 bits, see alignment E=4.8e-76 PF13558: SbcC_Walker_B" amino acids 1336 to 1424 (89 residues), 47.4 bits, see alignment 3.5e-16

Best Hits

Swiss-Prot: 82% identical to MUKB_CROS8: Chromosome partition protein MukB (mukB) from Cronobacter sakazakii (strain ATCC BAA-894)

KEGG orthology group: K03632, chromosome partition protein MukB (inferred from 86% identity to eay:EAM_1352)

Predicted SEED Role

"Chromosome partition protein MukB" in subsystem DNA structural proteins, bacterial or MukBEF Chromosome Condensation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1487 amino acids)

>LU632_RS09880 chromosome partition protein MukB (Erwinia tracheiphila SCR3)
MIERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFITALIPDLTLLHF
RNTTEAGATSGSRDKGLHGKLRPGVCYAALDVVNSVHQRVIVGVRLQQVAGRDRKVDIKP
FSIHGLPASINPTEILTEAVNARQARVLPLSELKDKFETMESVQFRQFNSITDYHSLMFE
LGIVARRLRSAADRSKYYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR
ENRMTLEAIRVTQSDRDLFKHLISEATSYVAADYMRHANERRIHLDGAILHRGELFGSRR
QLATEQYRHVEMSRELGEHNGAESDLETDYQSASDHLNLVQTAMRHQEKIERYESDIDEL
ACRLEEQSEVVAEAQEIQEENESRSETAELEVDELKSQLADYQQALDVQQTRAIQYQQAL
AALQRAQQVCQIPELSVDNAENWQETLRVKEQEATDKLLMLEQKMSVAEAAHSQFDLAFD
LVNRISGPVSRSEAWQRGRDLLHDASNQRHYAEQVPSLRGRLSELEQRLREQQDAERLLN
EFNKRHGQHYHPEELEALQHELEAQIEQLAESVSEAGERRMIMRQELEQVREQIARLTRQ
APHWLAAQEILTQLGEQTGQSLESSQQVTEFMQQLLERERETTVERDEVSARKRDVEKKI
ERFSQPGGAEDSRLNTLAERFGGMLLSEIYDDVTIDDAPYFSALYGPSRHAIVVPELSRV
RDLLDGLEDCPEDLYLIEGDPQSFDDSVFNVEELQKAVVVKAGDRQWRYSRFPKVPLFGR
AARENQLEQLHAERETLAERYATLSFDVQKTQRLHQSFSRFIGSHLAVAFEADPEAQIRT
LNSRRGELERTLGAHENENQQQRQQFEQVKEGVVQLNRLLPRLSLLRDETLQDRYDEILE
RLDEAQEAARFLQQHGNHLAKLEPLVGVLQSDPQQHDQLKQDYQQAQQVQRDARQQAFAV
TEVVQRRAHFGYVDSASMLDGNSDLNEKLRQRLEQAESERARAREQLRAHQAQLTQYSQV
LASLKSAHDARQDMLKELRQEMQDIGVQADASAEERARLRRDELYSALSNNRARRNQLEK
QLTFCEAEMDALQKKLKRVERDYHQSREQVVSAKAGWVAVLRMVKDNGVERRLHRRELAY
LGGDELRSMSDKALGALRLAVADNEHLRDILRLSEDPKRPERKIQFFIAVYQHLRERIRQ
DIIRTDDPVEAIEQMEIELGRLTEELTAREQMLAISSRSVSNIIRKTIQREQNRIRQLNQ
GLQSVSFGQVQSVRLNVNVRESHATLLDVLSEQHEQHQDLFNSQRLTFSEALAKLYQRLN
PQVDMGQRLPQTIGEELLDYRNYLDMEVEVNRGSDGWLRAESGALSTGEAIGTGMSILVM
VVQSWEEESRRLRGKDISPCRLLFLDEAARLDAKSIATLFELCDRLQMQLIIAAPENISP
EKGTTYKLVRKVINNTEHVHVVGLRGFAAEPVAASATGSAPEWQASS