Protein Info for LU632_RS09570 in Erwinia tracheiphila SCR3

Name: gsiD
Annotation: glutathione ABC transporter permease GsiD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 transmembrane" amino acids 36 to 59 (24 residues), see Phobius details amino acids 103 to 127 (25 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 163 to 181 (19 residues), see Phobius details amino acids 220 to 244 (25 residues), see Phobius details amino acids 265 to 288 (24 residues), see Phobius details PF12911: OppC_N" amino acids 23 to 68 (46 residues), 55.1 bits, see alignment 5.5e-19 PF00528: BPD_transp_1" amino acids 117 to 300 (184 residues), 111.4 bits, see alignment E=4.5e-36

Best Hits

Swiss-Prot: 80% identical to GSID_ECOL6: Glutathione transport system permease protein GsiD (gsiD) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K13891, glutathione transport system permease protein (inferred from 85% identity to ebi:EbC_14490)

MetaCyc: 79% identical to glutathione ABC transporter membrane subunit GsiD (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (301 amino acids)

>LU632_RS09570 glutathione ABC transporter permease GsiD (Erwinia tracheiphila SCR3)
MKNWRRNAALAAMPTLTQHPVRTPWREFWCRFRRQTVALISAGFVLLLIFLAVFAPWLAP
FDAENYFDYGRLTQGPSLMHWFGVDSLGRDIFSRVLLGTRFSLVSGFVSVVLGAVTGTFL
GLLAGYYEGWWDRIIMRISDVLFAFPGILLAIAVVAITGSGMSNVIIAVAIFSIPAFARL
VRGNTLVLKHLTYIESARSIGASDLTIILRHILPGTLSSIVVYFTMRIGTSIISAASLSF
LGLGAQPPTPEWGAMLNDARADMVMAPHIAIFPSLAIFLTVLAFNLLGDGLRDALDPKLK
T