Protein Info for LU632_RS09225 in Erwinia tracheiphila SCR3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 transmembrane" amino acids 16 to 38 (23 residues), see Phobius details amino acids 47 to 70 (24 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 110 to 137 (28 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 216 to 242 (27 residues), see Phobius details amino acids 248 to 268 (21 residues), see Phobius details amino acids 280 to 299 (20 residues), see Phobius details amino acids 306 to 327 (22 residues), see Phobius details amino acids 339 to 362 (24 residues), see Phobius details amino acids 368 to 385 (18 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 267 (248 residues), 78.6 bits, see alignment E=2.2e-26 amino acids 253 to 385 (133 residues), 36.6 bits, see alignment E=1.3e-13

Best Hits

Swiss-Prot: 55% identical to YHHS_SALEP: Uncharacterized MFS-type transporter YhhS (SEN3404) from Salmonella enteritidis PT4 (strain P125109)

KEGG orthology group: None (inferred from 79% identity to ebi:EbC_13630)

Predicted SEED Role

"Transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (393 amino acids)

>LU632_RS09225 MFS transporter (Erwinia tracheiphila SCR3)
MSSDFPLSGAQLNKRIISVVVLTFFCYLSIGLPLAVLPGYVHHQLGYSSFIAGLIISLQY
FATLISRPLAGRYADLLGPKKVVLVGLLLCGASGLFTVLALLPVNSPLTSLILLAAGRVV
LGVGESFTATGSTLWGIHIAGVVQSARVISWNGVATYLAMALGAPLGVLLNSAFGISGFA
VLIVLIAVYGFWLATRRPAVVVTVGQRIPFHKVFSRIWLFGLCLGLGSVGFGTIVTFITL
YFSSHNWQGAAFSLMLFSLGFVAIRLVFSNAIGRFGGIRVSLFCFAVESVGLLVIWLGAS
PLLVDIGAFFTGAGFSLVFPALGVEVIRQVAPQNQGAALGLYSAFLDFGLGITGPLVGLL
MGWQGVDVIYLAAAMVVFVVFMIILRRQFGGSN