Protein Info for LU632_RS09155 in Erwinia tracheiphila SCR3

Annotation: ATP-binding cassette domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 PF00005: ABC_tran" amino acids 19 to 167 (149 residues), 81.5 bits, see alignment E=4.9e-27

Best Hits

KEGG orthology group: None (inferred from 86% identity to ebi:EbC_13420)

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtE" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (239 amino acids)

>LU632_RS09155 ATP-binding cassette domain-containing protein (Erwinia tracheiphila SCR3)
MLSLRSINQFYGQNHILWDVDLDLPAGTCTGVVGQPGMGKTTLVNCIMGHLPINSGSMTW
QEANLPPQNLLLQPVERRAALGIGYVPQGCQIFSQLSVEENLQIALLAGAGHHRHRAIPQ
MIYDLFPAFYSLRHHRSGELPLDQQQQLVLARALVLKPKLLILDEPTDGMSPWLEEEMGN
LIHRLNHDFGLTILLLEQRISFIRRVADYFLLLHRGRNVAHGKVTDLNQRIIDTWLTAS