Protein Info for LU632_RS08880 in Erwinia tracheiphila SCR3

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 transmembrane" amino acids 17 to 38 (22 residues), see Phobius details amino acids 48 to 72 (25 residues), see Phobius details amino acids 93 to 114 (22 residues), see Phobius details amino acids 121 to 147 (27 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details PF01061: ABC2_membrane" amino acids 5 to 201 (197 residues), 46.3 bits, see alignment E=1.9e-16

Best Hits

KEGG orthology group: K09690, lipopolysaccharide transport system permease protein (inferred from 72% identity to pao:Pat9b_2577)

Predicted SEED Role

"O-antigen export system permease protein RfbD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (241 amino acids)

>LU632_RS08880 ABC transporter permease (Erwinia tracheiphila SCR3)
MGGQDIRQRYKRSRLGPFWITISMAVMITTMGMVFANLFKTPLHDFLPYLTLGLVIWGFL
SGCITEGCDALISAEGIIKQLPVPLHVHVLRVVWKNFIIFMHNIVIFPLVLFAVSKGINW
NVLLVVPGFVILALNVSWLLMVLALICARFRDMTQIIMSLMQVVFYLTPIIWMPQLLTHR
VGATLLNFNPFYHLMDVVRAPLLGQIPSVTTYCVTVIMAVIGIAFSTMMTSKFKYRVPYW
V