Protein Info for LU632_RS08105 in Erwinia tracheiphila SCR3
Name: menD
Annotation: 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 62% identical to MEND_ECO7I: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (menD) from Escherichia coli O7:K1 (strain IAI39 / ExPEC)
KEGG orthology group: K02551, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC: 2.2.1.9] (inferred from 62% identity to ect:ECIAI39_2412)MetaCyc: 62% identical to 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (Escherichia coli K-12 substr. MG1655)
synthase. [EC: 2.2.1.9]
Predicted SEED Role
"2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)" in subsystem Menaquinone and Phylloquinone Biosynthesis (EC 2.2.1.9)
MetaCyc Pathways
- superpathway of chorismate metabolism (50/59 steps found)
- superpathway of menaquinol-8 biosynthesis I (10/10 steps found)
- superpathway of demethylmenaquinol-8 biosynthesis I (9/9 steps found)
- 2-carboxy-1,4-naphthoquinol biosynthesis (7/7 steps found)
- superpathway of menaquinol-10 biosynthesis (9/10 steps found)
- superpathway of menaquinol-11 biosynthesis (9/10 steps found)
- superpathway of menaquinol-12 biosynthesis (9/10 steps found)
- superpathway of menaquinol-13 biosynthesis (9/10 steps found)
- superpathway of menaquinol-6 biosynthesis (9/10 steps found)
- superpathway of menaquinol-7 biosynthesis (9/10 steps found)
- superpathway of menaquinol-9 biosynthesis (9/10 steps found)
- superpathway of demethylmenaquinol-6 biosynthesis I (8/9 steps found)
- superpathway of demethylmenaquinol-9 biosynthesis (8/9 steps found)
- superpathway of phylloquinol biosynthesis (8/15 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 2.2.1.9
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (553 amino acids)
>LU632_RS08105 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase (Erwinia tracheiphila SCR3) MSHSIFNRRWAAVILEALTRHGVQHLCIAPGSRSAPLTLTAADNSKFLCHTHFDERGLGY LALGIAKATRQPVALIVTSGTAVANLFPAVAEARMTGERLIVLSADRPQQLIDCGANQSI CQPGMFGNHVAGALNLPSPSPEIPARWLVAVVDGLLQQHQSGAVHLNCPFAEPLYGGDPA AWQTWHDPLGDWWFDDQPWTAMPAKMTLTPQSDWANWRQQKGVVVVGRVDAEEGVAIAGW AAALGWPLLADVQSQTGNPLPCAECWLRLPEAQETLSQTRLVVQFGSHLTGKELTCWLAG IEPSAFWLIDPITGHRDPAYHRSQRLVANIADWLAAHPALSRPAWAAPLSRLAEQARQQV ADQTIVFGEAQLAARLDALLPSQGSLFAGNSLTIRLINALARLPAGYPVYANRGASGIDG LIATAAGVQQGSDAPVLLVLGDISALYDLNSLALLRQVSAPLVMIVVNNNGGQIFSMLPT PQGRRERFFAMPQQVCFSSAAEMFGLSYYQPENWQQLHRAVTDGWQRREATLIELCVVED DGANQLKNGGKAP