Protein Info for LU632_RS07565 in Erwinia tracheiphila SCR3

Annotation: phage tail sheath subtilisin-like domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 PF04984: Phage_sheath_1" amino acids 182 to 358 (177 residues), 102.3 bits, see alignment E=2.8e-33 PF17482: Phage_sheath_1C" amino acids 367 to 464 (98 residues), 65.8 bits, see alignment E=3.1e-22

Best Hits

Swiss-Prot: 77% identical to TSP_BPBMU: Tail sheath protein (BcepMu39) from Burkholderia phage BcepMu (isolate -/United States/Summer/2002)

KEGG orthology group: K06907, (no description) (inferred from 95% identity to cro:ROD_09161)

Predicted SEED Role

"Phage tail sheath monomer"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (475 amino acids)

>LU632_RS07565 phage tail sheath subtilisin-like domain-containing protein (Erwinia tracheiphila SCR3)
MSANYLHGAETIEVENGACPVKTVKSAVIGLIGTAPMGGVNTLVQCLSEKDAAAFGSQLT
GFTIPQALDAIYDHGAGTVLVINVLDPAVHKTAVADEDVTFDKATGKAQLANPVVAKLVL
KPASDGQPYVEGQDYSLDAQSGAITNLGKSIAAGATATASYNYADPTKVTPADIIGAVNA
AGNRTGMKLLNDSFNLLGYFAKILIAPVFCTQKSVSAELIAMAEKLGAVTYIDAPIGTTF
AQALAGRGPEGTINFNTSSDRVRLCYPHVRVYDAATNSERLEPLSQRAAGLRAKVDLDKG
YWWSSSNQEIMGITGVERQLSAMIDDPQSEVNLLNEQGITTIFSSYGSGLRLWGNRTAAW
PTVTHMRNFENVRRTGDVINESLRYFSQQYIDMPITQALIDALTESVNAYGRKLIGDGAL
LGFKCWFDPARNEETELAAGHLLLSYKYTPSPPLERLTFETEITSEYLLTLKGNS