Protein Info for LU632_RS06635 in Erwinia tracheiphila SCR3

Name: zipA
Annotation: cell division protein ZipA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details TIGR02205: cell division protein ZipA" amino acids 4 to 298 (295 residues), 289.4 bits, see alignment E=2.5e-90 PF04354: ZipA_C" amino acids 171 to 297 (127 residues), 164 bits, see alignment E=7.6e-53

Best Hits

KEGG orthology group: K03528, cell division protein ZipA (inferred from 64% identity to ebi:EbC_32710)

Predicted SEED Role

"Cell division protein ZipA" in subsystem Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (306 amino acids)

>LU632_RS06635 cell division protein ZipA (Erwinia tracheiphila SCR3)
MVQDLRLILIVVGAIAIIALLLHGLWTSSKERSSIFRDRPHKRIKPNREESFQEDDDRHQ
NSPLRVKRALLEDEDAEDDYSDVTVSPAAAKPQQVPTRPRDTQSEIDPLLDAETDQEPET
TLIHQQSSPPVHSVPENSMQPAEPQIEVVREKAGPAAESPVAKSERSKETVLVLHVAAHV
GGVLNGEALLQGILQAGFQFGEMNIFHRHLSPAGSGPVLFSLANMVKPGSFNPDEMSDFS
TPGISIFMMVPSYGDANQNFKLMLQSAQRIADDVGGVVLDDERRMMTPQKLEAYKARIRE
VTEVNG