Protein Info for LU632_RS05775 in Erwinia tracheiphila SCR3

Annotation: peptidoglycan-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 PF05838: Glyco_hydro_108" amino acids 13 to 88 (76 residues), 89.1 bits, see alignment E=2.1e-29 PF09374: PG_binding_3" amino acids 92 to 157 (66 residues), 43.3 bits, see alignment E=3.4e-15

Best Hits

KEGG orthology group: None (inferred from 61% identity to xne:XNC1_3369)

Predicted SEED Role

"SECRETION ACTIVATOR PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (168 amino acids)

>LU632_RS05775 peptidoglycan-binding protein (Erwinia tracheiphila SCR3)
MIPYSVTFIHAIDYMLTAEGGYVNDPADRGGETKFGISKRSYPALNIAELTQEQASEIYY
RDYWLKTGCDRLPAGISLAVFDGAVQHGYKTAIQQLQRALSVADDGIIGARTLAATEAIQ
PLLLFVRLMNQRSQTYARIIAHSPVQIRFMNGWFNRLDKLTASVLEVL