Protein Info for LU632_RS05335 in Erwinia tracheiphila SCR3

Annotation: DUF1281 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 PF06924: DUF1281" amino acids 31 to 206 (176 residues), 120.5 bits, see alignment E=8e-39 PF18406: DUF1281_C" amino acids 209 to 296 (88 residues), 78.8 bits, see alignment E=2.4e-26

Best Hits

KEGG orthology group: None (inferred from 76% identity to enc:ECL_00513)

Predicted SEED Role

"FIG01056640: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (316 amino acids)

>LU632_RS05335 DUF1281 domain-containing protein (Erwinia tracheiphila SCR3)
MFSWCHNRLEITGKSVCIDVMQSWVAGTETPLYRHAIRRGIKLFLAGCAGILKPVKLTEY
VPYPMLTASGTGTHTAPNQAFQHFLELLERDAWLDGTTLSRLEKIWQMSDIGSLKWESIP
YPARQIMTQLMAVHGADWFGMAGAGGQFDPQDRWEWLNALPETTCPCDMLMVMPSRLATE
LNGNSGLFTGLSSTSELYVQLFGMEFPAGHQARWNREDMSSLTLILSTPWYPPSGEVMGE
MSQMFDCEIRHYWLSPDVALSGYNCFDRGDHVDSGPWSAEASAVSAHGENARMYLVASDT
SDTPTPVALHYGSIRA