Protein Info for LU632_RS04975 in Erwinia tracheiphila SCR3

Annotation: sodium:solute symporter family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 474 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 43 to 61 (19 residues), see Phobius details amino acids 77 to 97 (21 residues), see Phobius details amino acids 123 to 142 (20 residues), see Phobius details amino acids 153 to 172 (20 residues), see Phobius details amino acids 179 to 202 (24 residues), see Phobius details amino acids 229 to 252 (24 residues), see Phobius details amino acids 264 to 288 (25 residues), see Phobius details amino acids 308 to 337 (30 residues), see Phobius details amino acids 358 to 374 (17 residues), see Phobius details amino acids 385 to 403 (19 residues), see Phobius details amino acids 410 to 427 (18 residues), see Phobius details amino acids 433 to 453 (21 residues), see Phobius details PF00474: SSF" amino acids 39 to 377 (339 residues), 99.4 bits, see alignment E=1.1e-32

Best Hits

KEGG orthology group: K03307, solute:Na+ symporter, SSS family (inferred from 90% identity to enc:ECL_02000)

Predicted SEED Role

"Acetate permease ActP (cation/acetate symporter)" in subsystem Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (474 amino acids)

>LU632_RS04975 sodium:solute symporter family protein (Erwinia tracheiphila SCR3)
MNTFTSQDTLIIVGIVIAYIVFTTWLTFRLRSKNSGDFMEGSRAMPAFIVGILLMSEYIG
AKSTVGTAQAAFEGGIAASWSVLGAAIGFPIFGLLLVKRIYNTGKITISGAIAEKYGNST
KNIISIIMIYALLLVNVGNYMSGAAAISTVLKVSLPVAAFITAIVSTFYFAYGGMKGVAW
VTLLHSALKYFGILVIMGFALYKTGGFTPMVQKMPDFYWTWDGNFGASTIFAWLIGTIGS
IFCTQFVIQAICSTKDVQSAKRSTWIAFFFCMPIALAIAVIGVAAKYLHPEINSLYAMPI
FLQDMNPWIAGLVTTSLVASIFVSVSTVALAIASLVVKDFYVPYRNPTPEQEFKATRWLS
LLIGFLPLIFVLLVPEVLKLSFFTRAIRLSITVVAVIAFYAPFFKSTRGANAGLIGSCVV
TSLWYVLGDPFGINNMYIALITPAVIMALDRIIPNKAHAKAKTKAPTPVQNSGV