Protein Info for LU632_RS02640 in Erwinia tracheiphila SCR3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 59 to 80 (22 residues), see Phobius details amino acids 90 to 112 (23 residues), see Phobius details amino acids 119 to 143 (25 residues), see Phobius details amino acids 154 to 177 (24 residues), see Phobius details amino acids 189 to 208 (20 residues), see Phobius details amino acids 243 to 269 (27 residues), see Phobius details amino acids 281 to 302 (22 residues), see Phobius details amino acids 310 to 329 (20 residues), see Phobius details amino acids 335 to 356 (22 residues), see Phobius details amino acids 376 to 395 (20 residues), see Phobius details amino acids 401 to 418 (18 residues), see Phobius details PF00083: Sugar_tr" amino acids 19 to 229 (211 residues), 68.4 bits, see alignment E=6.1e-23 PF07690: MFS_1" amino acids 37 to 385 (349 residues), 93.7 bits, see alignment E=1.1e-30

Best Hits

KEGG orthology group: None (inferred from 83% identity to ebi:EbC_06660)

Predicted SEED Role

"L-Proline/Glycine betaine transporter ProP" in subsystem Proline, 4-hydroxyproline uptake and utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (439 amino acids)

>LU632_RS02640 MFS transporter (Erwinia tracheiphila SCR3)
MPVNLVRRLTRQDVKTLSLAALGGALEFYDFIIFVFFAAVIGDLFFPADIPEWLRQLQTF
GIFAAGYLARPLGGIIMAHFGDSKGRKKMFSLSILLMALPTLAMGLLPVYATLGVAAPIL
LLLLRMLQGAAVGGEVPGAWVFVAEHVPEKRIGFACGALTAGLTTGILLGSVMATVINQT
FGPAGVAAGGWRIPFLIGGGFGLLALYLRRWLQETPVFSELQARKALAAELPLKTVVVNH
KRAVVVCMLLTWLLSAGIVVVILMTPIWLQKVCGIATAQALQANSLATVTLIAGCLCAGL
AADRFGASKTFIAGSILLALCSWVFYQTVSQHPERLFVCYGAVGFSVGVVGAVPYVMSRA
FPAEVRFTGISFSYNVAYAVFGGLTPIMVTLMMGVTPLAPAYYVLALSVLGLLVGIYLRH
GLNSVDSRASVQDDSRKRR