Protein Info for LU632_RS02305 in Erwinia tracheiphila SCR3

Annotation: DedA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 42 to 64 (23 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details amino acids 188 to 212 (25 residues), see Phobius details PF09335: SNARE_assoc" amino acids 48 to 172 (125 residues), 83.1 bits, see alignment E=1.2e-27

Best Hits

Swiss-Prot: 76% identical to YQJA_ECO57: Inner membrane protein YqjA (yqjA) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 85% identity to eta:ETA_29060)

Predicted SEED Role

"DedA family inner membrane protein YqjA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (220 amino acids)

>LU632_RS02305 DedA family protein (Erwinia tracheiphila SCR3)
MDIFKELIHALWQQDYEMLADPTLVWAIYIVLFSILFLENGLLPSAFLPGDSLLILVGVL
IAKGTMTFPLTLLILTTGASLGCWVGYIQGRWLGNTSLIQKWLSHLPEQYHERAHKLFHR
HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGFLWVLILTVMGFVLGKTPI
FLKYEDKLMFCLMLLPLVLLVLGLFGSLYVLWQKKRSTCR