Protein Info for LU632_RS01360 in Erwinia tracheiphila SCR3

Annotation: YhgN family NAAT transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 198 signal peptide" amino acids 1 to 6 (6 residues), see Phobius details transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 39 to 58 (20 residues), see Phobius details amino acids 62 to 89 (28 residues), see Phobius details amino acids 106 to 127 (22 residues), see Phobius details amino acids 139 to 163 (25 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details PF01914: MarC" amino acids 1 to 194 (194 residues), 202.9 bits, see alignment E=4e-64 TIGR00427: membrane protein, MarC family" amino acids 5 to 192 (188 residues), 107.6 bits, see alignment E=3.6e-35 PF03741: TerC" amino acids 20 to 92 (73 residues), 28.2 bits, see alignment E=1.5e-10

Best Hits

Swiss-Prot: 78% identical to YHGN_ECOLI: UPF0056 inner membrane protein YhgN (yhgN) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 91% identity to ebi:EbC_42250)

Predicted SEED Role

"Multiple antibiotic resistance protein marC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (198 amino acids)

>LU632_RS01360 YhgN family NAAT transporter (Erwinia tracheiphila SCR3)
MNEMISATILLLLMMDPLGNLPIFMSVLKHLEPKRRRVVLIREMLIALVIMLLFLFTGEK
VLAFLNLSTETVSISGGIILFLIAIKMIFPSHENSSSGLPAGEEPFLVPLAIPLVAGPSL
LATLMLLSHQYPEKIMSHLVGALLIAWGATVVVLLLSGLFLRLLGEKGVNALERLMGLIL
IMLATQMFLNGIRIYLKI