Protein Info for LU632_RS00740 in Erwinia tracheiphila SCR3

Name: tssM
Annotation: type VI secretion system membrane subunit TssM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1253 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 50 (18 residues), see Phobius details amino acids 55 to 75 (21 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 510 to 528 (19 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 56 to 1253 (1198 residues), 831.9 bits, see alignment E=5.2e-254 PF14331: IcmF-related_N" amino acids 238 to 515 (278 residues), 221.3 bits, see alignment E=2.2e-69 PF06761: IcmF-related" amino acids 568 to 888 (321 residues), 214.4 bits, see alignment E=3.9e-67 PF06744: IcmF_C" amino acids 1133 to 1234 (102 residues), 73.4 bits, see alignment E=2.3e-24

Best Hits

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1253 amino acids)

>LU632_RS00740 type VI secretion system membrane subunit TssM (Erwinia tracheiphila SCR3)
MVITFFALLIAAIWFIGPFLGFGETRPFESIESRVIFILIALLCLVALWFNAPFFLIVVA
TVCGIVWVIGPYIFIGDGYPLADMMARLIVIGAIFFLAIIYGVWKLLLALRNNPKLLDTF
FSSKEHKPEEQVHEINAVIRDAVDYIKKTNKDAPLIRRLFQPKKSLNDLPWYMVIGAKGA
GKTSAILNSGQSFPRPEQLSRVCKENASTENCECWFANQALFIDTAGKYIDEAHGELSEW
KGLLKSIRKYRPVKALNGVIVTVSVSDIMGRNKAELYDISSKIRSCLDDTRKSLGVHFPV
YVLVTKLDQLHGFAEYFRILTEQEREQIWGVTFPYGDNMKTAVAELRTLVESELSLLENR
IERNMTMRQQEEYENGDRKKMYALPQDFRLLNQAVIEILQNIFFVSRYDESQSHTSMRGV
YFSSSHQPQNSVMINNCTLIQKWRNFITNQSREHLAWSASVQKDTEFLIKDISYGRQYFL
RELFSEVIVKDATLVRHNLRVVSKYRFQNFFGHCLCLMVGALLLNGFYQSYHNNGAYLDA
IDIKVGKLENNVQSFLKTTNQTMLPVLLNLAQYLPEFSNLNIQEPDLDYRYGLYVGKEMD
RNADGLYHFFLRKLLFPMIESDLHNALRTAVDDAQPAEVYNKLKLYLMISGQGQFNLDYV
ITHVTDAWDSSGKIQPYQERSLFMAHLRNLFSQPSWREYGEEVDKTLLTDARELLNRNPH
SVRLYERVKSAMQADAPDNLTLNKITDEQAGQIFTSTDSTMLEKGVPGLFTYNGYHQIFK
KKLSSVLKKLDDEDRWIMGNTASAASLKMLRADPTAGIVDPTKDTLTRLYLQEYTQTWQK
FLQSIRLRSDGLDNQSMGLSFDIYMMRKLVSSNSPLINLAKVAVKETTLAAEQPENLLKG
QNIIANNQLIDAASKVNLALAAQEKIILRRGVDDYFASLREFVGGEADAVGRSASGTRLA
TIIDVLNEQYTQLVISDSAIQQGNLPEVSDIGQRLSAESAVWPDPFKYIIAPLLTGAYKR
VNYQVVSNANKTIAASLGEVCRTTLQGRYPFVDTTEEVSLRDFEQFFAVGGIVDDYFMKN
LADKVDTSTRPWRYERNVDVSSSEGLGIFELTQQIQKAFFQNGNNKLAVNYTVAIPYMSP
TVSQLTLNFDGNIMTYAHGPVMPKSFNWPGKRSESIVSMSLKPRITLEDNGVTKKGPWAL
MRWLDTVEDIETSDTGQPVLIFDMNNRQVKVEVTGLTYKNELIIDLLKNFNCP