Protein Info for LU632_RS00675 in Erwinia tracheiphila SCR3

Name: tssG
Annotation: type VI secretion system baseplate subunit TssG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 PF06996: T6SS_TssG" amino acids 24 to 321 (298 residues), 292.7 bits, see alignment E=1.7e-91 TIGR03347: type VI secretion protein, VC_A0111 family" amino acids 24 to 321 (298 residues), 304.1 bits, see alignment E=4.8e-95

Best Hits

KEGG orthology group: K11895, type VI secretion system protein ImpH (inferred from 68% identity to ypb:YPTS_2770)

Predicted SEED Role

"Uncharacterized protein ImpH/VasB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (341 amino acids)

>LU632_RS00675 type VI secretion system baseplate subunit TssG (Erwinia tracheiphila SCR3)
MPHKPVTITKTTPTLDAWFNKERPWDAGFISLMRAIAAKNHGSPLPGLATLPSQEKYRLG
QAATMIFSPREIARVDTDEDKTRLQLFGLGIWGPQGAMPLHLSEQIYSRTELHDRTMVDF
IDIFHHRALSLFYRAWYVAQDTASLDRTDDERFSFYVASLAGMDPQELDSNILPAHARLA
SSAHLVREARNPDGLLGALQYYFEVPAEMEEYASQWILLSPQDRSILGENNYGALLLGDG
AILGDTVKDRQHKFKLVLGPLTLQQYMRFSPWGQDLPVLREWVRNFIGYEYAWDTQLMLA
ASEVPRATLGGAHQLGYATWLERAETDVPVYGMSFEPELHQ