Protein Info for LU632_RS00420 in Erwinia tracheiphila SCR3

Annotation: type III secretion system protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 transmembrane" amino acids 61 to 83 (23 residues), see Phobius details PF09482: OrgA_MxiK" amino acids 8 to 183 (176 residues), 85.6 bits, see alignment E=2.2e-28

Best Hits

KEGG orthology group: None (inferred from 37% identity to eta:ETA_19140)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (184 amino acids)

>LU632_RS00420 type III secretion system protein (Erwinia tracheiphila SCR3)
MKYDFDNLLNILYSPSNYTHDSYFSDFTVSRDILGDTLVNYWLIEYYKLEDLPKDWAPNG
IVISLLLNHWQILSAAAHFAGGYLMRDQLMKHAATLATDSRLLSFISLPILYQANIENEF
SDTHFTTIENGAAFIMSIASTLPRALQQRLALCFAHNMNKPPCVANPTPDNLNLLKMSII
YASN