Protein Info for LRK53_RS18865 in Rhodanobacter sp000427505 FW510-R12

Annotation: conjugal transfer protein TraG N-terminal domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1168 transmembrane" amino acids 37 to 57 (21 residues), see Phobius details amino acids 69 to 91 (23 residues), see Phobius details amino acids 111 to 127 (17 residues), see Phobius details amino acids 364 to 388 (25 residues), see Phobius details amino acids 394 to 414 (21 residues), see Phobius details amino acids 454 to 480 (27 residues), see Phobius details PF07916: TraG_N" amino acids 14 to 491 (478 residues), 189.1 bits, see alignment E=7.6e-60

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1168 amino acids)

>LRK53_RS18865 conjugal transfer protein TraG N-terminal domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MLIPLFHNVGGTWTIYSVGDGLFMKRVLDGVAAMSNSGLFLALGALGMMLGLLMIAFQHL
VANGQKLEIGSLLMSFMLFAVFFGAKTNVVIEDLGGAPGSVQNAAYAVDNVPFGLAVAGS
LISKVGLTLSEKMSQGYGLPGGATDENGVSGFGRSLEWINAVRNWELPEFAGAGANDVVS
RFKRNVTDYVANCTLVGADNGLIDLPRAFQASDPFQMGSTSGGGIGYNNMYVTTKWQNAD
GTIGGKDCASAMTALAADAHGNALFASFANAAAPRMKRLAPGVPADTQMMDAFADIGISG
DKAADYMAASAVNAIWTMALRKGSDPSGLDVMSQVMINQGTEQRATQWGADESMFRQVMR
PTAAFFESMIYAMAPFMALMVGLGPWGIRKMGQYMILTIWVALWQPVLAVVNLFQMTMVE
HSVAAMSQVPPGATPLSMTSLAGAANLQHQIVNWIATGSTIAAATPAITMMLIFGGAVAA
TSLSGRLQGAEFSNEKLTTPDVAKEAPVMEMKSMQTHSQTAGTHVTGAGGIQPTFSGSEV
SEAAVSSTSSALQSASRTMTAQNGKALQAGIANNEGVNVSGGSAISSTATQSQKEAADFI
KGQGMTIGANQEAAWAAVMAVSASGGVEAGLSAAKGLGLNVGAGASGSSSFSEKDARSLL
ESVKDEVSRGGSFSATLAKASTDSVNQMASNGSTATQSVMGSSAFQAARSDMEQKQEAYQ
TAVSSRGSFTLGQSLGSLEAAHGIKQSNRGAEVIAKAQELAGADAMRDAQHMVDNAPWRS
SDAEERKIQAAQLALKGTDLPDQGVLRPGTEGARQLALMQSLQYAGGAFGGGVMSAATGD
ARANEGLASGVRAGQATAAVNRANPGSGVTEGEIRSRATPFLAGDTGGAQADVAQRSGMS
DADGLLGSKAALDEFRANPSGSELTKQVDGYHDDHLQDQRDAGRVVREANTERALENDTG
GFSRSLKSGYNAVAQAVKNNSPLSIGASLAAARMAEGGAPASKVEEGLKGYNESSTAYMG
AVLTASGGGPATYGLTKLAEYGGSLTAFHGTTESTMLAAATDPERGAQIDGAFQERLASL
QASDGPYQSSDLITARAVADTIYSEHGATPAMAKAYDDAYGRLSDNEKLYFQKYAGVANN
ANIGGGVGDLGPAVSRAGLNPNGLTNPM