Protein Info for LRK53_RS18645 in Rhodanobacter sp000427505 FW510-R12

Annotation: RHS repeat-associated core domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 TIGR03696: RHS repeat-associated core domain" amino acids 141 to 215 (75 residues), 69.7 bits, see alignment E=2.4e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (374 amino acids)

>LRK53_RS18645 RHS repeat-associated core domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MTTGAYPRAYDAAGNTTGSVVGGETFGFAYNNRGRLGLAQRNGVTAGTYVYNVLGERVAK
DAGSATTQFAYDEASQLASEATDGGFRDYVRLGDLPVAVVDTPAGAAPAEVRYIHADGLG
STRVVTDQTTAPVWRWAYARNPFGEQRPGGTFDFALQFPGHYADAETGLKYNVQRYYEAT
LGRYGRPDPLGLAAGPSVYGYVGSDPLALIDPLGLDYMDTLWATIYRATGGWSPPQHTVD
FWAGLGDGASLGITRLIRKAAGTDEMVDRCSSAYSVGSWSSFALGAGRLAYAGLAKAGSR
LASSGLQASAFRSGLRRAFGGGHSFRPPNLAKYGTDEALRAAAGRTNTIGNAWGAAASIS
GYYGATATSCDCTP