Protein Info for LRK53_RS18015 in Rhodanobacter sp000427505 FW510-R12

Annotation: cyclic beta 1-2 glucan synthetase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2879 transmembrane" amino acids 425 to 447 (23 residues), see Phobius details amino acids 454 to 481 (28 residues), see Phobius details amino acids 833 to 850 (18 residues), see Phobius details amino acids 856 to 877 (22 residues), see Phobius details amino acids 895 to 910 (16 residues), see Phobius details amino acids 954 to 974 (21 residues), see Phobius details amino acids 980 to 1001 (22 residues), see Phobius details PF10091: Glycoamylase" amino acids 1336 to 1533 (198 residues), 64.4 bits, see alignment 2.3e-21 PF06165: Glyco_transf_36" amino acids 1600 to 1849 (250 residues), 274.8 bits, see alignment E=1.4e-85 amino acids 2106 to 2345 (240 residues), 283 bits, see alignment E=4.4e-88 PF17167: Glyco_hydro_36" amino acids 2376 to 2801 (426 residues), 390.7 bits, see alignment E=1.5e-120 PF03633: Glyco_hydro_65C" amino acids 2802 to 2841 (40 residues), 24.6 bits, see alignment (E = 3.4e-09)

Best Hits

Predicted SEED Role

"Cyclic beta-1,2-glucan synthase (EC 2.4.1.-)" (EC 2.4.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.-

Use Curated BLAST to search for 2.4.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2879 amino acids)

>LRK53_RS18015 cyclic beta 1-2 glucan synthetase family protein (Rhodanobacter sp000427505 FW510-R12)
MNIGNLLDLLKLRRLQAFRRRRAAARTRPEQEPALRAELFSAEQMERHGRALAGQHRLSA
RITPDTLLARLDDNEAVLTHTCERLTDASRKRRRITPAAEWLLDNFYLIEEQIRIARRHL
PKGYSRELPRLASGPSAGLPRVYDIALEIISHGDGRVDTHILQHFIDAYQEVSPLKLGEL
WAIPIMLRLALIENLRRVAARVMADWSHRGQAARWADAMTATAEREPNSVVLVVADMARS
VPPMDSPFVAELARRLQGQSPALALPLSWIEQRLAASGQSIEHLVQLEAQQQAANQVSIS
NSIGSLRTLSAIDWRDFVEHCSLVEHGLREDPAGVYAAMDFATRDRYRHVVEAMARRHRL
TELQVAEAAIALSQAAAPTDSSVPLPQHVGYYLIDRGRPRLEQQLGIHPPLRETLRRGFD
RAPLPIYLGLLALLTFAFAQPLVAVAAHQHWSTWALAALAVPAAILASQLGLSLLNWIAT
LSIAPRQLPRMDYSHGIPASARTLVAIPSLIAGAQDVDELAEALEVRFLGNRDEHLHFAL
LTDFADAAHETLPGDEALLQRAQRRIEALNERYASARADRFFLFHRPRRWNPGEQCWMGH
ERKRGKLADLNALLRGNAHGRFMLIVGDIASLDPVQYVITLDTDTELPRDAAQAFVGTID
HPLNRAVYDPVLRRVVSGYAILQPRVGISLPSTARSRYAQLYGSDAGIDPYTQMVSDVYQ
DVFGEGSFIGKGIYAIDPFERALDGRFPDNRILSHDLVEGCHARAGLLSDVQLFESYPAR
YGADVKRRHRWIRGDWQLLPWLLPWAPTAHDGWRRNALTALSRWKILDNLRRSLVPVALL
VLLIVGWLLIGTVLSWTLAVLSMVLLPPLLAALLELVQKPREVQLDQHLRAGFQAGLQHL
ARMALGLAWLPHEALYHLDAIVRTLWRVTVSQRHLLQWQTSSEVERRSGNAPAALWRLMG
IGPALALLLGVVLAHERPMVLWLAAPLLLLWLVSPAIAWWISQPRVPGAFAPSTAQQRFL
RTLARQTWAFFDTHVGAAEHWLPPDNLQEQPGPAIAHRTSPTNIGLALLANLAAHDFGFL
GSGRLLERTGHTLATMQQLPRHRGHFYNWYDTQNLQPLAPLYVSAVDSGNLAGHLLTLRP
GLEELADQPVFQPRVLHGLRDTLALLRDTLDPDLARALDPLDRQLQESLATPPARTGAAS
TLLLQLRGHAQALVPRLDTEPGSEARFWLDALLAQCDELCTEAAAFELDPPADDAAGFEG
IPTLRQLARIEPLVWPAGADAEGVRERARERLAVIVQLAQQAGELALMDYRFLYDSARDL
LAIGYNVDQRRLDAGYYDLLASEARLASFVGIAQGQLPQENWFALGRLLTTVGGEPVLLS
WTGSMFEYLMPLLVMPSYEGTLLEQTCHAAVTRQIEYGNQLGVPWGVSESGYNTLDAHFT
YQYRAFGVPGLGLKRGLGDDVVVAPYASALALMVAPAAATRNLQRLAEIGARGRYGLYEA
IDYTPARLPPGQDSALVRQFMAHHQGMSLLALGHALLDRPMQRRFESDPQFQATSLLLQE
RVPKTAAEYLHASGFPESDGSPRPAEARLRVFADPDRARPAVQLLSNGRYHVMLSSAGGG
YSRRGELALTRWHEDITRDAWGMFCYLRDVASGECWSTAYQPTLKKTEQFEAIFSDARAE
FRVREREFDAHTEIVVSPEDDIELRRTRIGNRSRTRRTIELTSYAEVVLAPPLADAAHPA
FSKLFVQTELVPALQAIVCTRRPRSADELVPWMFHLLAVHDADIDTISYETDRARFIGRG
RSTAEPQALDREQARLSDSAGSVLDPIVAIRCRITLEPEQTATIDFVTGYAEQRDDCLQL
IGKYRDRHLADRVFDLAWTHSQVLLRQLNASLADAQLYEHMATGILYPNAGLRAEPAVLR
GNRRGQSGLWGQSVSGDLPIVLLQIASPSRIELVRQLVQAHAYWRQKGLAVDLMIWNEDR
AGYRQELHDLIMGLIASGSEASLLDRPGGIFVRSGQQLSGEDRLVMLASARIVLNDSRGS
LAEQIGRRQVETHAPRFEPSRPRRIASATPVGGAGAPALQLANPHGGFSHDGREYVIILA
AGDSTPAPWANVLANPQFGTVISESGSAYSWGENAHEFRLTPWHNDPVGDGGGEALYLRD
EDTGQIWSPTPLPCRGSGSYTTRHGFGYSVFDHHEDGIHSELWVYVALDASVKFSVLHLR
NDSGAPRRLSVTGYVEWLLGDLRGKTSMHVVTESDPASGALFARNAYNSEFPNRVAFFDV
DDPERGIGGDRSEFLGRNGSMRAPAGLARAHLSGRLGAGLDPCAALQSMVSLGEGEQRRL
IFRLGLGRDAAEASALVQRFRGSGSAADALDKVRAHWARVLGAVQVRTPEPSLDVLANGW
LLYQTIGCRLWARSGYYQSGGAFGFRDQLQDSMATLHAAPELSRAQLLLCAAHQFAEGDV
QHWWHPPLDRGVRTTCSDDYLWLPLAIARYVLASADRGVLEEYVGYIEGRLLHEGEESYY
DLPQPSALRETLYQHGVRAIERSFARRGAHGLPLIGGGDWNDGMNRVGEQGRGESVWLGF
FCCDVLQRFAEVARLHGDEPFAQRCEGEVVKLRSALEQHGWDGAWYRRAYFDDGTPLGSS
SNDECRIDSIAQSWSVLSGIGAPERQRQAMDSLDAHLVRRDAGLVQLLRPPFDKSAMDPG
YIKGYLPGVRENGGQYTHAAIWATMAFAELGDSARAWELLHMINPVNHGIDAAQMDVYKV
EPYVVSADVYAVAPHIGRGGWSWYTGSAGWMYRLIVESLLGLRLEAGQLRFAPVLPAEWE
GFELDYRHRGTLYRIRLHQSDAGTPSTLWLDGEMQPDGRIPLADDGAEHDVELNWPRQA