Protein Info for LRK53_RS17930 in Rhodanobacter sp000427505 FW510-R12

Annotation: patatin-like phospholipase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 PF01734: Patatin" amino acids 23 to 237 (215 residues), 103.8 bits, see alignment E=1.4e-33 PF12536: DUF3734" amino acids 274 to 378 (105 residues), 123.5 bits, see alignment E=4.4e-40

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 62% identity to reh:H16_A0225)

Predicted SEED Role

"Ferredoxin reductase" in subsystem Anaerobic respiratory reductases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (393 amino acids)

>LRK53_RS17930 patatin-like phospholipase family protein (Rhodanobacter sp000427505 FW510-R12)
MSHPDPAPSLAERVARDYRTIALVLQGGGALGAYQAGVFEALDEAGLQPTRLAGISIGAL
NAAIIAGNPPGQRVERLREFWEAICRPPLWPATPALPWFDAVAWPTAWLNGMSGLAAWRA
MTEGQAGFFHPRLPPPLLGGHATPGSVSWYDTTPLRATLERLVDFDRLNDARTLRVAVGA
VNVRSGNFAYFDNRRQRLRPEHFMASGALPPGFPAVEVDGEFYWDGGMVSNTPLYEVLSE
RPGCDTLVFQVDLWSARGALPRDLADVAERSKEIQYSSRTRLVTEFMRRTQEQRRLLHDV
MALVPAERRDDPAYRHAEARAAEALTNVIHLIYRNRPHEGHFKDYEFSVASMRCHWQSGL
DDMRHTLAHPQWLAAPDPGRPFVTHDVHRGEAG