Protein Info for LRK53_RS17545 in Rhodanobacter sp000427505 FW510-R12

Annotation: DUF3883 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1449 PF13020: NOV_C" amino acids 1333 to 1404 (72 residues), 25.1 bits, see alignment 7.6e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1449 amino acids)

>LRK53_RS17545 DUF3883 domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MIWEDQPGVDDLIDPRTPEFANAVITGLASALASSPGALKKMMRGAAAAAEDLNVEPFQG
LTEVIQNADDLRASEVRFAFRDTDVGRELLIVHDGQPVACQHVLGMALPFVTTKTHRTDQ
RGRFGIGLKTLKRIAVDLAIHSAPYHFSGDQLSVQLVRAEGPLPGFYDPATDTMIILRLK
PDFSEEGLKAWLAEWEDDGLIFLSWVSSFRWCDLTGATLEGRTLSFGAWENVALVGGRAR
ITALSRREIQSASASWTVWSATLPVPGHLHPAHKARAEETRISIAVPSAAGAGSLYIGFK
TRIPLDLPFSLDAQFDPSTTREVLIESTWNNWLIERCGDVLGEIAHGRMLEAPEDAWRFV
PVAAEYVGNEGDRWLRDGFAKSFETARDWIGEHAAILIGGAPVALSDIAYEYADLSDLLT
PADIEALAEGSRALSRDVRDAGGRWRTVLDQIGVCATVGTTELLEGFRQSLFQPKGPSWW
VKAARVLVEIHADEELFDVPFWLTDESRAVVCKRGGTTAKPLVLGGEFSLFSLRWNLLDR
LHAAYGIEEDGDVAIKWLDEHAAFQTSVDTATELAAFAERFAATPLEIADAELRELRDRF
DDLRDHRAGEIGHAVGAALMVDGFVYKNGKMHRQKVRPTEAYLCKTLDSDFPNWPTAAEN
IPGIHWISAGYDEKLKTGATRAHRKRADGTTSRGPRKFFALLGVENAPRLKQTGLVLWGG
ATRTRELRAAQAEQVPADWISPDLDRVLATFPKLSKKELRERSPALFKAIGRAWERSYAS
RKMVASQHEARVYVYAKAPVTAQWLIQLRETPWMAIGKGELVTPNEAVVKTQETQTLYAS
TAFAVGIDLGDFSADFAATVGLVTSVQVSDLVKLLRDTRDGVKDIDDAQVMAIYRNIAKY
VPSAAVWNTRIGDITVQELRRFFSENQGLIHVGGDVWRRPSELMRGKDIFHDRSRFVPGG
PALASLWSALDVREPTLDDCLTFLKSLGGQAYDVGVTSRLIDVYRYMEALLANAERRHRE
RMKTLPLYCGDCWESERPIFLVEESELRSQLANALPAKKFWTPPCDLRELPSFVAFTGVT
RSEPTLIVVDDRGTAQDRGDGKRAHFRQAVDHLSDELARNDPEVRQRMAIGWDVLREIPL
LVHAGPIAVLARDDELSAAKIPIQLQALIVRDPLELHVWDEALPKREYGGHAIASLFPHA
SRRGMEAEWVVAWQDARDTASDGIRLASDEEHAEAMEDRAARINAALKKKISVSTPGGKG
PAVKPRTLKNSVGPILGATLVSGSDPKTAPPLAKPKLHDTPPPTKPSYPGSRTAPTAYTD
RDLEQRGWELLSQVLETSAEELLVDFRNRHGVGADGAIDWKTFVEMKATGRAPQGSIEMS
NAEYERAKERGNDFILALVSGLEDGYQDEVRLIFDPANRATVRPLNGVKLVALTDAPLVL
ISFGNSSEE