Protein Info for LRK53_RS16210 in Rhodanobacter sp000427505 FW510-R12

Annotation: M23 family metallopeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 27 to 50 (24 residues), see Phobius details PF01551: Peptidase_M23" amino acids 207 to 301 (95 residues), 110.6 bits, see alignment E=1.7e-36

Best Hits

KEGG orthology group: None (inferred from 46% identity to pfv:Psefu_3557)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (309 amino acids)

>LRK53_RS16210 M23 family metallopeptidase (Rhodanobacter sp000427505 FW510-R12)
MQIILVSRARKLPKTLDLADHRLRWKLFSAAALAVLGCMGVGVALAMLVASPRDRALAEI
RDLQQQARQQDAQLGGVRQEAQRSLDALAVKLGQLQAQSTRLNALGERLAEVGKLDDGEF
DFDQQPAVGGVEDPGSSAYALPPALDNSITQLASQFDRQQAQLSALQSLLLDARIESNLK
PTGMPVPGYISSYFGVRADPFDGRSARHTGIDISTPLGTLVHTVAEGMVTFAGVRQGYGN
VVEIDHGNGYMTRYAHNSALVARPGQHVQVGDVVARAGSTGRSTGSHVHFEVWYNGRVVN
PLAFVRNHR