Protein Info for LRK53_RS16135 in Rhodanobacter sp000427505 FW510-R12

Annotation: hybrid sensor histidine kinase/response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1193 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 784 to 805 (22 residues), see Phobius details PF07494: Reg_prop" amino acids 48 to 70 (23 residues), 17.6 bits, see alignment (E = 8.4e-07) amino acids 141 to 164 (24 residues), 17.1 bits, see alignment (E = 1.2e-06) PF07495: Y_Y_Y" amino acids 715 to 776 (62 residues), 36.2 bits, see alignment 1.1e-12 PF00512: HisKA" amino acids 831 to 896 (66 residues), 73.4 bits, see alignment 3e-24 PF02518: HATPase_c" amino acids 943 to 1051 (109 residues), 100 bits, see alignment E=2.8e-32 PF00072: Response_reg" amino acids 1071 to 1182 (112 residues), 82.2 bits, see alignment E=7.7e-27

Best Hits

Predicted SEED Role

"Histidine kinase/response regulator hybrid protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1193 amino acids)

>LRK53_RS16135 hybrid sensor histidine kinase/response regulator (Rhodanobacter sp000427505 FW510-R12)
MSAWLLGVVLGALFVSMPAALAEPVVAGTPAAAPLPTPQFRRYGTTDGLPSGAIYAAAQD
RNGLMWFGSAGGLVRFDGVGFKVFRHATDDPNSLPANPTYSLLIDRDNRVWTGGISTGLT
AYDQKSERFRLWTHDDKQPASLASDEVWGMAQTADGTLWVATEGGLDRLRPDGGGFDHIP
LDVGGGKRSASFGQTRALFAGADGRLWIGAESGLYLRESDGTMHKVPVDPSFGGDLGKTW
RIDGGHGEIRVSLTGGLLIIGADGVARPLASRQLSSQRIMSSTRDASGRLWIATAEGVFL
DQVDGDHADGQLQRIAAQPLLQGGLPSSKTWQTTLDGEGGLWITFEQSSIAYLPPGWGGF
SRFTHIPDDADSLTGIAASTILMGRDGRLWLGGNDGWIDKLDAVTGRIQHVAQGIQGQIV
SLAEDSRGRLWIDNPPQLHLLDRGKLASIDLGHARVTRPVLLCAGDAGRVYVASWNEGVF
VVDPDSLAIAPVAMEQGSDGILRPDQITFHAGSLWYASEGGLLRQDEKDGKLRFVPGIPR
QEIVAFAFDATGFWLATNGSALEHYRYADGHAVQDDGIDLDHEGLKSDLRDLRVDRQGRL
WVFANPGLWLFDQHTRRFKSFGPAHGLSNANFDGTATAMAPGGMMFVASSGGVVAFQPER
LLQTEKAGSLPALSLAYLNVQRAGEVRAIALDSKVVQLGWRDRDLRVGVRLASFINPAVN
HYRFRLNGFDSGWVDAGNRAERDFAGLAAGDYTLEVRAAGADDRWVGLATPISIHVQAPP
WLRWWAWAIYVLLAAALAGLVLRGWRRRMAQRHRMQLVEQQRQLAEAASAAKTQFLATLS
HEIRTPMTGVMGMAELLLSTPLNRQQHDYTQAMQRSGGMLLKLLNDALDLARIEAGKLEL
EPVPFEPRQLLGDVAQLEQGLAHAKGIRFVLELAEELPAQLLGDAVRIKQILLNLANNAL
KFTEHGSVILRAQRIEGGLQFSISDTGPGIPEASQARLFQRFEQAESPQRRAGSGLGLAI
CRELVDMMGGSIELESRLGHGSTFRVRLPLSAPAVAPAPVERPSGRSYRLLLVEDDTIVA
AVIRGLLEREGHAVVHVVNGLAALAELAHAQFDAVLLDLDLPGVDGFQIARLIRQREHAG
LRLPIVAVTARQGSEDEAKARAAGMDGFLRKPLSGEQLVAALVRVVDGPMMPA