Protein Info for LRK53_RS15905 in Rhodanobacter sp000427505 FW510-R12

Annotation: translocation/assembly module TamB domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1248 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF04357: TamB" amino acids 909 to 1247 (339 residues), 184.6 bits, see alignment E=1.8e-58

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1248 amino acids)

>LRK53_RS15905 translocation/assembly module TamB domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MKWVKRTAIAFATLLLVLAAALWWLLDTSAGLRFALARAQAGTGGALQVQQAQGHLFGPL
DLAGIRYDDGKGTVVTVAKARLDLRFWPLLARRVHVATLDVDGVEVALPKPAEQNSANAG
GFSLQPPVALILDRAHVGTVKVLQGGQPLFACNRLDLAGSWTDRGIELRQLVLQAPDGHA
SLDGRLGIGARYQGDGNAAFAWKIGDTSYAGDLDAHSDGKQAQIDLQLTAPAVARLRVDL
VQSGDYAWTSRLDAPRFDPKALLGTGSLKALAIAVQGHGDRYGGTLDGQLDLDDYPLLLQ
PLRAQFSRDYATLTLQQLKLGSPRIKGSVEVSGIMQLAAKPPNAQLDIRWNELQLPAELI
GQALASHGELKASGSADRYHAEGSVAIGPPGMPAQLALNLDGTPQRVTLHTLALKQPQGG
LQVAGTLTLQPSLAWQAEASASKFDPGQLIAGWNGTLDFTMASSGSLANNGPDATLEIRQ
LSGKLRERVIGGHGKLHLSPDQVIDGRLDLTSGRSTVKLLARPGASNDTDLQLAIASLGD
WLPDAGGRLDGHFSIRGRQPRLSVNGQLHGQSLAWQQQKVDALQLVAGIPDISHPAGKLD
LRTRGAHLQGLQFQQLDLLAEGSQGDHRLDVDARGSQLSGRLALRGALKGSTWSGTLSTL
NLEPQSMPGWRLLQPARLSYNDGAMSLSELCLTAGEPQLCVAAKQDKPGNLDASYRLQAL
PLALLLNASGNADLPMRADGVIEGSGKVRRSAAGALNGHASISSTQGSISYTDHTEEPLL
RYQQLRLTADLAPASRRIELHGGLDDGGRIDGQLTLSGAQQTLGGQLDLRLNNLAFIELL
SSELANVKGHADGNLRFAGTLGRPAFTGQANVRGFAAEVPSAGLKLSDGQLALSTMDARQ
LLIRGQLTSGAGTLAIDGNAGFGAGMPTRLTLKGSHFTAADIPAAKVVVSPDLTVQQDGR
GIDIGGALGIDSADINVDILPGAGATRASPDVVVVDEKQQQAAGKLPVSATVKVDLGQQT
HVIGMGLDGRVGGVLTVLERPGRATTGQGQLTVDGTYKAYGQNLRIQRGQLLFASTPIDN
PGLNIRAVRKLNPNATIDEGQEVGLLVSGTAQRPILTVFSNPVMEQSDALSYLVTGKPLS
QVKSGEGDMVSAAAQALGSAAGDLLAKSVGAKLGADDVGVSSNEALGGSSAFTVGKYLSP
RLYLSYGVGLFEPGEVITLRYRLSRRWNFEAQQATEFGRASLNYRIEK