Protein Info for LRK53_RS15885 in Rhodanobacter sp000427505 FW510-R12

Annotation: ATP-dependent RNA helicase HrpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1343 TIGR01967: RNA helicase HrpA" amino acids 29 to 625 (597 residues), 896.6 bits, see alignment E=1.5e-273 PF00270: DEAD" amino acids 90 to 237 (148 residues), 31.2 bits, see alignment E=6.1e-11 PF00271: Helicase_C" amino acids 292 to 417 (126 residues), 44.3 bits, see alignment E=6.9e-15 PF04408: HA2_N" amino acids 480 to 506 (27 residues), 21.7 bits, see alignment (E = 6e-08) PF21010: HA2_C" amino acids 507 to 563 (57 residues), 27.3 bits, see alignment (E = 1.5e-09) PF07717: OB_NTP_bind" amino acids 674 to 749 (76 residues), 38.6 bits, see alignment 3.6e-13 PF11898: DUF3418" amino acids 764 to 1340 (577 residues), 607.2 bits, see alignment E=1.3e-185

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1343 amino acids)

>LRK53_RS15885 ATP-dependent RNA helicase HrpA (Rhodanobacter sp000427505 FW510-R12)
MRGPMNDTHSTANDSAGSGLRGQLETVCSRDFGRLLGRWRALSRRPDEDKLASLRADIER
SAAKRRARAVAKPPIRLDESLPISARGKDIVKLIREHQVVVIAGETGSGKTTQLPKLCLA
AGRGEAGMIGCTQPRRLAARSVARRVAEELGTPLGEVVGFQVRFNDQVSERSLIKFMTDG
ILLAETQGDPWLSAYDTLIIDEAHERSLNIDFLLGYLKRLAIKRPELKIIVTSATIDTAR
FAEHFDGAPVVEVEGRAYPVETRWRPVGGQSHFSQAKSDSDHRQGSAEHIAAVLDEITRG
DPRGDVLVFLPGEREIRDAHLLLSRRQYRETEIMPLYARLSAGEQDRVFKPGVKRRVVLA
TNVAETSLTVPRIRYVIDTGTARVKRYSQRSQLERLHVEPISQAAADQRKGRCGRVGPGI
CYRLYDEADFAGRAAFTDPELLRSSLANVILRMLALKLGEVDEFPFLEAPDPRVVADGFR
RLTEISAIDEGRKLTAIGRTLAKLPIDVQLARMLVEGEQLHALRELLVIVAFLSIQDPRE
RPADARQQADAAHAAFADPKSDFAGVLNLWRAYHDAHEELTQSKLRDWCSRHFLSFMRMR
EWRELHRQLLLVVGELGWKLDGQPQAARPAPPPARRGRLGGGEAFKIKSTPPQPSPASRG
GSESVDADRLYESVHRALLAGLPTQVGRKDEKGVYQSTRERKFQLFPGSALAKAPPNWVF
CAQILDVGGRVWGMMNARVEPLWIEQQAAHLLRTHCRDPHWSKKRGCVVAYEQVSLFGLV
LVEKRPVTFQRQDPALAHAIFLREALVRGDIDTKVDFVRANQRVLEEAQGIEAKQRREGL
IRHEDELVAFFEGKLPEEIASSRALDVWYRKARPAEQAALRWSLDDVMAGGAGLDARAFP
AALEIGAQRYRLEYRFVPGDEADGVTLQLPLAMLNALRLARCEWLVPGLLADKVAELIRG
LPKALRRNFVPAPDFARAFVEAEAPRDESLVKALAAFLQRATGVELAAGDFTAVELPPHL
LMRYRLHDERGRTLASGRDLAALRGQWEGPAREAFSRKTDLELTREDVASWDFEEIPAQL
RSEGGLTAFPALVDLGETVALRVFERSDEARVAHRQGVVRLLRNALASEAKQARRRLPIG
HALALKYAPLGGVEGLREDLLEGGFADLLQRHELDVRTAGAFESLRTQCARELFGAGVER
LKLAEPIIEAQADLKPWLQPPLLGFARASHDDLREQFDALLVPGFLRELPPARLAHYPRY
LKAMRLRGERLRQDPAKDQQRLLQVLPYWRAYLQHRAAGADPAGLDELRWLIEEWRVSLF
AQELKTAEPVSAKRLAKALAALG