Protein Info for LRK53_RS15770 in Rhodanobacter sp000427505 FW510-R12

Annotation: YeiH family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 transmembrane" amino acids 18 to 35 (18 residues), see Phobius details amino acids 40 to 58 (19 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 188 to 210 (23 residues), see Phobius details amino acids 223 to 241 (19 residues), see Phobius details amino acids 258 to 279 (22 residues), see Phobius details amino acids 285 to 305 (21 residues), see Phobius details amino acids 317 to 338 (22 residues), see Phobius details PF03601: Cons_hypoth698" amino acids 20 to 319 (300 residues), 262.3 bits, see alignment E=2.5e-82

Best Hits

Swiss-Prot: 45% identical to Y799_STRP6: UPF0324 membrane protein M6_Spy0799 (M6_Spy0799) from Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)

KEGG orthology group: None (inferred from 70% identity to put:PT7_0530)

Predicted SEED Role

"Putative membrane protein YeiH" in subsystem YeiH

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (341 amino acids)

>LRK53_RS15770 YeiH family protein (Rhodanobacter sp000427505 FW510-R12)
MNTPLAAALARPTLRSRAAGLLLAVAIALVAWWLGRRLPLVGGPVIGILLGIAVRNVLSP
GARFTPGIAFAGKQVLQWSIIALGFGLSLDQVAKTGLESLSVTLVTLTVAFVSAWALGRW
LGVHDKLKVLIGVGTAICGGSAIAAVTPIIEADDHDTAFAISTIFLFNVIAVLVFPPLGH
LMQLSDLGFGLWAGTAINDTSSVVAAGYSYSHAAGDYATIVKLTRATLIIPICLVLAFAV
AAREKKKSAADFSLRRIFPWFILWFLVASALRTVGLIPAATLPALHVVAEFLIIVALTAI
GLSANLRKMIASGARPILLGLGVWIAVAVSSLMVQLVIGRL