Protein Info for LRK53_RS15440 in Rhodanobacter sp000427505 FW510-R12

Annotation: TIGR03013 family PEP-CTERM/XrtA system glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 278 to 301 (24 residues), see Phobius details TIGR03013: sugar transferase, PEP-CTERM system associated" amino acids 19 to 466 (448 residues), 540.5 bits, see alignment E=3.7e-166 TIGR03025: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase" amino acids 20 to 466 (447 residues), 391.3 bits, see alignment E=7.6e-121 PF02397: Bac_transf" amino acids 275 to 460 (186 residues), 216 bits, see alignment E=1.5e-68

Best Hits

KEGG orthology group: None (inferred from 45% identity to hch:HCH_02714)

Predicted SEED Role

"capsular polysaccharide biosynthesis protein" in subsystem Rhamnose containing glycans

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (466 amino acids)

>LRK53_RS15440 TIGR03013 family PEP-CTERM/XrtA system glycosyltransferase (Rhodanobacter sp000427505 FW510-R12)
MYGLIRFRALHWQLLLASVEFVLLVASVYGAVVLRYLGDVNTQVAFSEALHWRGLLVAMM
LIVSMEALGLYQVHLRAGWLGRLSRQGIAFALGWIALTVLYYAVPAAYLGRGVLGIALVV
GYLVVALWRVVFLGFVDADLFKRRVVMFGAGERAAEVSHKMRRRTDQRGFKVLGYVPVGD
DPISVSAPLLLHPDGALYEWAARRGVDEIVVGPDDRRGTLPVDALLECKQRGMAVTELTE
FFEREAGRIKMDLTNPSWLIFSDGFNSSPVRRSIKRAFDVAVATLVLLVAWPFMLLTALA
IRLESGRGAPILYHQERVGENGELFSVIKFRSMGIDAERDGVARWASKNDGRVTRVGHFI
RNARLDELPQLWNVLCGDMSIIGPRPERPQFVADFNTRIRYYRLRHCVKPGLTGWAQLRY
PYGSSLEDAEQKLNFDLFYVKNHNLVFDLTILAQTVEVVLFGRGAR