Protein Info for LRK53_RS15130 in Rhodanobacter sp000427505 FW510-R12

Annotation: flagellar hook-associated protein FlgK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 624 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR02492: flagellar hook-associated protein FlgK" amino acids 4 to 332 (329 residues), 250.5 bits, see alignment E=2.1e-78 PF00460: Flg_bb_rod" amino acids 5 to 34 (30 residues), 27.4 bits, see alignment (E = 5.3e-10) PF22638: FlgK_D1" amino acids 96 to 322 (227 residues), 239 bits, see alignment E=1.1e-74 PF21158: flgK_1st_1" amino acids 333 to 410 (78 residues), 38.7 bits, see alignment E=1.7e-13 PF06429: Flg_bbr_C" amino acids 582 to 620 (39 residues), 37.7 bits, see alignment 2.3e-13

Best Hits

KEGG orthology group: None (inferred from 42% identity to xop:PXO_06163)

Predicted SEED Role

"Flagellar hook-associated protein FlgK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (624 amino acids)

>LRK53_RS15130 flagellar hook-associated protein FlgK (Rhodanobacter sp000427505 FW510-R12)
MVDMLSTGVSGLLAAQIGLGTVSHNVANANTDGYSRQQVSFSARLPEGQANYYVGTGVNT
VAVQRAYSQFLNSSLWSATSAQGRAGSMASLTGQLNDQLSGSSNLQTSLDSFFGAVQDMA
NAPSDAASRQVLLARAGGLASTFRALSGQFNQLSGQVQQQIGEAVDAINSDSRSIAKLNG
LIRSSQATDGTPPADLLDQRDALVKKLAGQVGISVVPQNDNTISVFVGNGQALVTGTEAH
ALGTAPNAYDATRLEVVGAASGAVLSGRIGGGTLGALLDFRGNVLDPAQNQLGRSAQALA
SAFNAQHAQGMDLRGKLGGSFFDVAGPAVQAAATNSGSGTLSAGIGDIGALTGKDYVLSY
NGSSWSMRDTSGNSVALAGSGTNAAPFTAAGLSLVVGGSASAGDSFRVQPSRNAAASFSV
AIDDPDKVAAAAPLKVAAAAGNTGTASPTVSVSNGSDPNLFSSSSVVFASATSYSIDGGP
AQVFAPGQTIVHNGWSMQLGGAPQAGNRFSVQANSNAQGDNSNALMLGKVANLGVLDGGV
TSAGRAYSQLVGQVGSAGALAKDDLSTQTAVYSQAMSSQQSVSGVNLDEEAANLLRYQQA
YQASAQVISTANSIFGALLSAVKG