Protein Info for LRK53_RS15015 in Rhodanobacter sp000427505 FW510-R12

Annotation: flagellar biosynthesis protein FlhB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 transmembrane" amino acids 33 to 54 (22 residues), see Phobius details amino acids 92 to 116 (25 residues), see Phobius details amino acids 149 to 167 (19 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details TIGR00328: flagellar biosynthetic protein FlhB" amino acids 7 to 352 (346 residues), 384.6 bits, see alignment E=2.2e-119 PF01312: Bac_export_2" amino acids 7 to 347 (341 residues), 409.8 bits, see alignment E=4.8e-127

Best Hits

KEGG orthology group: K02401, flagellar biosynthetic protein FlhB (inferred from 46% identity to pap:PSPA7_3878)

Predicted SEED Role

"Flagellar biosynthesis protein FlhB" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (378 amino acids)

>LRK53_RS15015 flagellar biosynthesis protein FlhB (Rhodanobacter sp000427505 FW510-R12)
MSDDSDQEKTEQPTEKKLRESREKGEVPRSRDLSGAMVVLAGVAALMSGGEQAFAHARRI
FSLGMHYSRDALFSDDLPGRTLHAVVYEALGLFWPVALATMLATLAAPLLLGGLNFSAQA
LQPKFERLDPIKGLGKIFAMRGLVELGKALLKLLFIGAVLVLLLRHWQSELQATGRGPVL
AGIAQSISLLGRAALWFGSMLALIGGIDALYQKFDHTKNLRMTRQEIKDEMKESEGNPEI
KGRIRQVQQAQARRRMMEELPKADVVVVNPTHFAVALRYDEGRTGAPRVIAKGVDVLAQQ
IRLVAGSHRIPLVEAPPLARALYATTELGREIPAALYVAVAQVLAYVYQLKQATAQGEAP
PAAPTPEVDPDLMGPYRE