Protein Info for LRK53_RS14755 in Rhodanobacter sp000427505 FW510-R12

Annotation: carboxypeptidase regulatory-like domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1080 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 33 to 113 (81 residues), 63.1 bits, see alignment 2.5e-21 PF25183: OMP_b-brl_4" amino acids 249 to 1007 (759 residues), 156.5 bits, see alignment E=1.1e-49

Best Hits

Predicted SEED Role

"Oar protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1080 amino acids)

>LRK53_RS14755 carboxypeptidase regulatory-like domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MNNRIRAKLLPFAIASLLAGAPAMAQNVTSSAVNGRVVDANGQPVTGATVQIVHVPSGTT
KIVTTDSDGRYAAQGLRVGGPFDITAAKAGLSQSERDNVYLQLGQTSAINLTMAASTAEA
KNLGEVTVSASTLAQTFSADNKGLSTNVSGRKLETTPQGNRSIDDIARLDPRINVTDQGD
GSISAAGLPNRYNNISVDGISQGDPFGLNANGLPYQGSPISVDTIGEYNISTANFDVTSD
TVGADINAVTKSGTNEFHGSVYYAYRNANKMVGDAGWLESSDRGYNYTGYQRDWTGGVTV
GGPIIKDKLFFFFSAEREKTVGIGADSANGLDSSLGNGPSTSNRVSPGDLQQVIDTAKAL
GLQPGSLGASGTTLEDKRYLGKIDWNITDNHRASLTYQYTKETQPIVQGNSSNTIGLSSY
WYTKNSLTKNAALQFYDDWTPNFSTEAKISYQSFEQLAGNALNQPQVRVYLSPNSKGPSV
YLGEDQYRHENAINTKKWSAFLAGTFYLGDHTIKGGIDYQRNEIYNLFGRTEHGNYTFYG
LNNFAQGKYDSYYLYQPAPGYTLNDVAATWTYSQFSPFLQDTWQVNNNLSLTYGVRVNIP
HANHAPLYNAAFERTFGYPNNTKLGTKNKVVEPRLAFNYSFDTERMTQLRGGVGLFQTVP
PTVWMTNPYQNNGLTVASYSSFDPATAPFSPNPYGQNIPTGTQSQPAAVVDTIDPNFKLP
SVWKATLAFDRELPWWGMVGTVELQHIKVRNGIFYQAINIGAPTGLLPDGREQYWARPGQ
AASSRDAAANRNKAFDRQSTLLTNTQKGKSDSLTLSLSKPFSENWFGDVSFTMTHATDVN
PGNSSQAFSGYQYVVRKNVNDEVAGTADRNTARTVKASLTWQHAFFGDYKTSVSAFYSGH
SGLPYSWIFSGDANGDGIFYQDPIYIPTIGDSKVSYGKASPQLIQQFQDFVSGNKYLNAH
RGQIASRNGDHYGWVNQLDMSFSQEIPGLFKGNKGVVRLDVYNFLNLLDKKWGQTVNTQY
NTRTLAGYDGVNAQGQYIYSLPTDKSGNYQPQQLIRYDAGSNPTRVVSRWSAMLTLRYTF