Protein Info for LRK53_RS14720 in Rhodanobacter sp000427505 FW510-R12

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 18 to 35 (18 residues), see Phobius details amino acids 50 to 73 (24 residues), see Phobius details amino acids 87 to 106 (20 residues), see Phobius details amino acids 112 to 137 (26 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 187 to 209 (23 residues), see Phobius details amino acids 221 to 239 (19 residues), see Phobius details amino acids 245 to 265 (21 residues), see Phobius details amino acids 277 to 297 (21 residues), see Phobius details amino acids 303 to 331 (29 residues), see Phobius details amino acids 358 to 373 (16 residues), see Phobius details amino acids 379 to 399 (21 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>LRK53_RS14720 hypothetical protein (Rhodanobacter sp000427505 FW510-R12)
MTQLRLEQAPAPSLPRRFLLGAPCWGMLAGVLLIVDGDAALRMRWSPATLALVHVFTLGV
LGNAMLGSVLQFLPAAAGVRVRGSATLGPWLHGLFNFGVLLLVAGLHQGWHVALIVAAVL
LPLAFVLLAAMTVPGLLAAAGQRLLRAGFGVAIGFAVLTALLGGLLALGLAGDLDLPLAA
LADVHAGWGVLGWVVVLMATVARVVMPMFQGTGTLREPVQAAWLGSAVLALFGAAGWRLA
GGAGAWLLGTVLLLGLLFAVAGLWLQWRAPRPRRGPLLWSWRAGLAMLALAALALPADVR
GGMLAGALGLGVALPLLVSGMMLEIVPFIGWIELHRRIGRGVQLPGVQRLLPVHEKNRVL
LAQLPLLLLPMAACWPSTWLARVAGLALVLAWGCAWWTLRGVRRRANHFLSTVEPRP