Protein Info for LRK53_RS14590 in Rhodanobacter sp000427505 FW510-R12

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 551 transmembrane" amino acids 43 to 65 (23 residues), see Phobius details amino acids 79 to 100 (22 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 175 to 202 (28 residues), see Phobius details amino acids 232 to 250 (19 residues), see Phobius details amino acids 270 to 289 (20 residues), see Phobius details amino acids 300 to 319 (20 residues), see Phobius details amino acids 340 to 361 (22 residues), see Phobius details amino acids 392 to 410 (19 residues), see Phobius details amino acids 421 to 441 (21 residues), see Phobius details amino acids 453 to 471 (19 residues), see Phobius details amino acids 491 to 510 (20 residues), see Phobius details amino acids 522 to 542 (21 residues), see Phobius details PF07690: MFS_1" amino acids 29 to 182 (154 residues), 35.1 bits, see alignment E=3.7e-13

Best Hits

KEGG orthology group: K02575, MFS transporter, NNP family, nitrate/nitrite transporter (inferred from 79% identity to pna:Pnap_3762)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (551 amino acids)

>LRK53_RS14590 MFS transporter (Rhodanobacter sp000427505 FW510-R12)
MNTKSGPGAAPATHSSGADIDDWRPEDPAFWQTTGKRIAYRNLWISIPALLCGFAIWGMW
GIITVQMLNLGFPFTQAELFTLTAIAGIAGATMRIPASFLIRLAGGRNTIFLTTAMLLAP
AIGTGIVLQHKDWPLWAFQLMALWCGVGGGNFASSMSNITGFFPKRLQGTALGLNAGLGN
FGVTTMQIVIPLVMTVSIFGALGGGPETLLKESGWIFGKIPAGTPTWIQNSGFAWALSLV
PLSILCWFGMNNLKTISPATGNSLVAFAKITYLYTLAFVPSIFMLWLYLPAPTGLGVLNV
WAAIPLDIILMLAVMKLAAFGPMKEGVTRQFEIFRNRHTWAMTILYIVTFGSFIGFSMAL
PLSMKVIFDVIHVPDANGVMAHTQPNPNGLPVLAYAWIGPFVGALTRPIGGWISDKIGGS
IVTQWVSVVMVVASVAAGYVMMKAYHSATPEDYFFTFLALFVLLFAATGVGNGSTFRTIG
AIFDRQQAGPVLGWTSAVAAYGAFAAPVVIGEQIKLGTPEMAMYGFAAFYALCLLLNWWF
YLRKNAYVKNP